cortex-lab/phy

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phy: interactive visualization and manual spike sorting of large-scale ephys data

Stars: 430
Forks: 187
Open beginner issues: 0
Indexed issues: 77
Avg merge: 2h 31m
Merged PRs (30d): 2

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Aug 21, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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77 open issues indexed

Questions about scales Open

area: documentation type: enhancement

Difficulty 3/5 1-2 days Newbie friendliness 20/100

cortex-lab/phy#1059 · Opened Dec 10, 2020
Go to next spike with ISI < refractory period Open

area: gui type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1058 · Opened Dec 6, 2020
ClusterView/clust_info.tsv columns disappear during curation Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

cortex-lab/phy#1052 · 3 comments · Opened Nov 11, 2020
No display Open

area: visualization status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1047 · 3 comments · Opened Nov 4, 2020
No correlogram? Open

area: visualization status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 42/100

cortex-lab/phy#1044 · 3 comments · Opened Oct 30, 2020
Line through waveforms in traceview Open

area: visualization type: enhancement

cortex-lab/phy#1036 · 1 assignee · Opened Sep 27, 2020
A feedback when saved would be good Open

area: gui type: enhancement

cortex-lab/phy#1033 · 2 comments · 1 assignee · Opened Sep 15, 2020
Incorrect channel positions in TraceImageView? Open

area: visualization type: bug

cortex-lab/phy#1029 · 1 assignee · Opened Aug 21, 2020
Waveforms and Filtering Open

area: documentation type: enhancement

cortex-lab/phy#1028 · 1 assignee · Opened Aug 19, 2020
Inconsistent key-binding behavior for TraceView Open

area: gui status: needs-info type: bug

cortex-lab/phy#1025 · 1 comment · 1 assignee · Opened Jul 25, 2020
Phy get stuck on linux Open

area: performance status: needs-info type: bug

cortex-lab/phy#1022 · 2 comments · 1 assignee · Opened Jul 12, 2020
Unit wrongly assigned to channel Open

area: data status: confirmed type: bug

cortex-lab/phy#1017 · 10 comments · 1 assignee · Opened Jun 23, 2020
WaveformView displays noise Open

area: visualization status: confirmed type: bug

cortex-lab/phy#990 · 5 comments · 1 assignee · Opened Apr 1, 2020
Use Phy to compute template similarity in SpikeInterface Open

area: data type: enhancement

cortex-lab/phy#989 · 6 comments · 1 assignee · Opened Mar 31, 2020
RAM maxes out with large datasets Open

area: performance status: confirmed type: bug

cortex-lab/phy#980 · 2 comments · 1 assignee · Opened Mar 18, 2020
GUI not displaying data Open

area: visualization type: bug

cortex-lab/phy#979 · 10 comments · 1 assignee · Opened Mar 18, 2020
Similarity values are all 1.000 in similarity view Open

area: visualization scope: legacy-kwik status: needs-info type: bug

cortex-lab/phy#974 · 1 comment · 1 assignee · Opened Mar 11, 2020
kilosort2 data is extremely slow on Phy Open

area: performance status: confirmed type: bug

cortex-lab/phy#952 · 13 comments · 1 assignee · Opened Feb 10, 2020
Option to toggle log scale in histogram view Open

area: visualization priority: low type: enhancement

cortex-lab/phy#903 · 1 assignee · Opened Oct 7, 2019
Customize the table columns independently in the cluster and similarity views Open

area: gui priority: low type: enhancement

cortex-lab/phy#902 · 1 reaction · 1 assignee · Opened Oct 7, 2019
Activate lazo in waveform view Open

area: visualization priority: low type: enhancement

cortex-lab/phy#897 · 18 comments · 1 assignee · Opened Sep 19, 2019
Customize the number of time samples in templates/waveforms Open

area: visualization priority: low type: enhancement

cortex-lab/phy#886 · 1 assignee · Opened Aug 23, 2019
Logarithmic correlogram view Open

area: visualization priority: low type: enhancement

cortex-lab/phy#841 · 1 assignee · Opened Jun 14, 2019
Events Open

area: visualization type: enhancement

cortex-lab/phy#839 · 5 comments · 1 assignee · Opened Jun 14, 2019
more extensive logging Open

area: gui priority: low type: enhancement

cortex-lab/phy#754 · 7 comments · 1 assignee · Opened Jun 7, 2017
SimilarityMatrix Open

area: visualization priority: low type: enhancement

cortex-lab/phy#644 · 2 comments · 1 assignee · Opened Sep 16, 2015
training mode Open

area: gui priority: low type: enhancement

cortex-lab/phy#350 · 2 comments · 1 assignee · Opened Jun 17, 2015

cortex-lab/phy

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