bigbio/quantms
View on GitHubQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
- Stars
- 83
- Forks
- 57
- Open beginner issues
- 0
- Indexed issues
- 45
- Avg merge
- 4h 14m
- Merged PRs (30d)
- 1
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Aug 15, 2026
- Latest indexed
- Sep 14, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- help wanted
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enhancement
bigbio/quantms#69 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
bigbio/quantms#79 · 0 comments · 0 reactions · 0 assignees ·
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enhancement question
bigbio/quantms#273 · 5 comments · 0 reactions · 0 assignees ·
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enhancement help wanted high-priority
bigbio/quantms#283 · 0 comments · 0 reactions · 0 assignees ·
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bug
bigbio/quantms#299 · 1 comment · 0 reactions · 3 assignees ·
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enhancement help wanted high-priority
bigbio/quantms#303 · 8 comments · 0 reactions · 1 assignee ·
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bug
bigbio/quantms#327 · 13 comments · 0 reactions · 1 assignee ·
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bug
bigbio/quantms#329 · 11 comments · 0 reactions · 3 assignees ·
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bug enhancement high-priority
bigbio/quantms#340 · 2 comments · 0 reactions · 2 assignees ·
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documentation enhancement high-priority
bigbio/quantms#344 · 4 comments · 0 reactions · 2 assignees ·
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documentation enhancement high-priority open-search sage-support
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bug
bigbio/quantms#364 · 3 comments · 0 reactions · 4 assignees ·
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enhancement high-priority research-projects
bigbio/quantms#410 · 13 comments · 0 reactions · 3 assignees ·
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enhancement
bigbio/quantms#411 · 12 comments · 0 reactions · 0 assignees ·
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enhancement
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enhancement high-priority
bigbio/quantms#434 · 0 comments · 0 reactions · 3 assignees ·
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enhancement question
bigbio/quantms#440 · 8 comments · 0 reactions · 4 assignees ·
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enhancement
bigbio/quantms#455 · 20 comments · 0 reactions · 3 assignees ·
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enhancement
bigbio/quantms#457 · 2 comments · 0 reactions · 0 assignees ·
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bug
bigbio/quantms#465 · 1 comment · 0 reactions · 2 assignees ·
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enhancement
bigbio/quantms#469 · 6 comments · 0 reactions · 0 assignees ·
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bug
bigbio/quantms#470 · 2 comments · 0 reactions · 0 assignees ·
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enhancement
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enhancement
bigbio/quantms#478 · 0 comments · 0 reactions · 0 assignees ·
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documentation enhancement high-priority question
bigbio/quantms#493 · 0 comments · 0 reactions · 2 assignees ·
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enhancement
bigbio/quantms#497 · 0 comments · 0 reactions · 2 assignees ·
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bug high-priority
bigbio/quantms#529 · 7 comments · 0 reactions · 2 assignees ·
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enhancement low-priority
bigbio/quantms#532 · 1 comment · 0 reactions · 0 assignees ·
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enhancement low-priority research-projects
bigbio/quantms#558 · 0 comments · 0 reactions · 0 assignees ·
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enhancement high-priority
bigbio/quantms#559 · 4 comments · 0 reactions · 3 assignees ·
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enhancement
bigbio/quantms#584 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
bigbio/quantms#591 · 10 comments · 0 reactions · 1 assignee ·
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enhancement
bigbio/quantms#592 · 6 comments · 0 reactions · 1 assignee ·
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enhancement low-priority
bigbio/quantms#607 · 0 comments · 0 reactions · 0 assignees ·
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bigbio/quantms#638 · 7 comments · 1 reaction · 2 assignees ·
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bigbio/quantms#645 · 0 comments · 1 reaction · 0 assignees ·
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bigbio/quantms#646 · 1 comment · 0 reactions · 0 assignees ·
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bigbio/quantms#647 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
bigbio/quantms#648 · 77 comments · 1 reaction · 2 assignees ·
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bigbio/quantms#654 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
bigbio/quantms#658 · 1 comment · 0 reactions · 0 assignees ·
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bug
bigbio/quantms#685 · 5 comments · 0 reactions · 0 assignees ·
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bigbio/quantms#691 · 0 comments · 0 reactions · 0 assignees ·
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Bug fix high-priority
bigbio/quantms#698 · 0 comments · 1 reaction · 2 assignees ·
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bigbio/quantms#703 · 0 comments · 0 reactions · 0 assignees ·