We should dynamically configure some of the steps depending of the experiment size.

### Description of feature

@daichengxin, @jpfeuffer:

When running multiple datasets, I have found that it would be good to have some logic to configure memory and CPU depending on the number of files. We have done that approach for the proteomicsLFQ step, however other processes could also benefit from it. Here is a list of process to review:

- [ ] NFCORE_QUANTMS:QUANTMS:TMT:PROTEININFERENCE:IDFILTER
- [ ] NFCORE_QUANTMS:QUANTMS:DIA:ASSEMBLE_EMPIRICAL_LIBRARY Issue #339
- [ ] ID:DATABASESEARCHENGINES:SEARCHENGINESAGE