SAGE failing in big database

### Description of the bug

```
tail -n 500 -f /hps/nobackup/juan/pride/reanalysis/proteogenomics/PXD010154/work/b6/6e37bc1f0f149a2785a8bd4d3968ab/out_17_sage.log
Found Sage version string: Version 0.14.3
Creating temp file name...
Creating Sage config file.../tmp/20231123_073725_hl-codon-bm-10.ebi.ac.uk_43_1.json
Sage command line: /usr/local/bin/sage /tmp/20231123_073725_hl-codon-bm-10.ebi.ac.uk_43_1.json -f GRCh38r110_GCA97s_noncanonical_proteins_19Jul23-decoy.fa -o . --write-pin 01524_B03_P015424_S00_N18_R1.mzML 01277_E01_P013129_S00_N05_R1.mzML 01283_A01_P013187_S00_N01_R1.mzML 01320_E04_P013559_S00_N29_R1.mzML 01296_D03_P013201_S00_N19_R1.mzML 01093_C02_P010748_S00_N11_R1.mzML 01279_A01_P013163_B00_N01_R1.mzML 01500_H04_P015160_S00_N32_R2.mzML 01698_A04_P018021_S00_N25_R1.mzML 01077_A03_P010695_S00_N17_R1.mzML 01501_A02_P015161_S00_N09_R1.mzML 01323_C05_P013562_S00_N35_R1.mzML 01276_E04_P013128_S00_N28_R1.mzML 01293_F03_P013196_S00_N22_R1.mzML
Standard output: Running: /usr/local/bin/sage /tmp/20231123_073725_hl-codon-bm-10.ebi.ac.uk_43_1.json -f GRCh38r110_GCA97s_noncanonical_proteins_19Jul23-decoy.fa -o . --write-pin 01524_B03_P015424_S00_N18_R1.mzML 01277_E01_P013129_S00_N05_R1.mzML 01283_A01_P013187_S00_N01_R1.mzML 01320_E04_P013559_S00_N29_R1.mzML 01296_D03_P013201_S00_N19_R1.mzML 01093_C02_P010748_S00_N11_R1.mzML 01279_A01_P013163_B00_N01_R1.mzML 01500_H04_P015160_S00_N32_R2.mzML 01698_A04_P018021_S00_N25_R1.mzML 01077_A03_P010695_S00_N17_R1.mzML 01501_A02_P015161_S00_N09_R1.mzML 01323_C05_P013562_S00_N35_R1.mzML 01276_E04_P013128_S00_N28_R1.mzML 01293_F03_P013196_S00_N22_R1.mzML

Standard error: [2023-11-23T07:37:25Z WARN sage_core::modification] Variable modifications must be specified as a list of modifications: [0.984016]. This will become a HARD ERROR by v0.15
[2023-11-23T07:37:25Z WARN sage_core::modification] Variable modifications must be specified as a list of modifications: [0.984016]. This will become a HARD ERROR by v0.15
[2023-11-23T07:37:25Z WARN sage_core::modification] Variable modifications must be specified as a list of modifications: [15.994915]. This will become a HARD ERROR by v0.15
[2023-11-23T07:37:25Z WARN sage_core::modification] Variable modifications must be specified as a list of modifications: [42.010565]. This will become a HARD ERROR by v0.15
[2023-11-23T07:37:33Z TRACE sage_core::database] digesting fasta
[2023-11-23T07:37:55Z TRACE sage_core::database] modifying peptides
[2023-11-23T07:42:35Z TRACE sage_core::database] sorting and deduplicating peptides

thread '' has overflowed its stack
fatal runtime error: stack overflow
Process '/usr/local/bin/sage' crashed hard (segfault-like). Please check the log.

SageAdapter took 06:50 m (wall), 0.12 s (CPU), 0.08 s (system), 0.04 s (user); Peak Memory Usage: 42 MB.```

### Command used and terminal output

_No response_

### Relevant files

_No response_

### System information

_No response_