bigbio / bigbio/quantms

Support for .dia file format in quantms pipeline

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#430 8 comments 1 reaction 1 assignee Assigned to @Copilot View on GitHub
enhancement
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Nextflow
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4h 14m
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Description

### Description of feature

Hello quantms team,

I would like to request the addition of support for the `.dia` file format as an input option in the **quantms** pipeline. Currently, as per the documentation and community feedback, the pipeline supports `.raw`, `.mzML`, and Bruker `.d` file formats. However, `.dia` files are not supported as input at this time.

Given that [DIA-NN](https://github.com/vdemichev/DiaNN?tab=readme-ov-file#raw-data-formats) is capable of handling `.dia` files directly, implementing support for this format would enhance the flexibility and usability of the **quantms** pipeline. This would enable users who work with `.dia` files to directly utilise the pipeline without having to convert file formats beforehand, thus streamlining the workflow.

This feature would be valuable for users who generate `.dia` files and wish to take advantage of quantms's capabilities without needing additional file conversion steps. It would improve the pipeline's versatility and cater to a wider range of workflows.

Thank you for considering this feature request.

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