CDCgov/DynODE

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CDC/CFA/Predict/Scenarios ODE Modeling Framework

Stars: 13
Forks: 3
Open beginner issues: 0
Indexed issues: 40
Avg merge: 19h 43m
Merged PRs (30d): 1

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 16, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

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40 open issues indexed

Need to relook `config.dimension.VaccinationDimension`... Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

CDCgov/DynODE#463 · Opened Jun 25, 2026
Consider Adding A Codeowners File Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

CDCgov/DynODE#459 · 1 comment · Opened Feb 14, 2026
Poetry install of the package also installed old deprecated files... Open

CDCgov/DynODE#454 · 1 comment · 1 assignee · Opened Dec 2, 2025
Experiment Tracking Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#452 · Opened Jul 29, 2025
Release latest (evolved) DynODE version Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#450 · Opened Jul 11, 2025
reduce default `SolverParams.max_steps` and add more descriptive errors. Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

CDCgov/DynODE#447 · Opened Jul 1, 2025
staged github actions Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#429 · 1 comment · Opened Jun 9, 2025
add tests for distributions with Negative support to purely positive fields Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

CDCgov/DynODE#425 · Opened Jun 4, 2025
add `pydantic` validators capable of handling `numpyro.distributions` objects Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

CDCgov/DynODE#424 · Opened Jun 4, 2025
Test New Features - Story Open

CDCgov/DynODE#415 · 1 comment · 1 reaction · 1 assignee · Opened May 30, 2025
Adapt hill fitting code to fit logistic+linear functions Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#407 · 1 comment · Opened Apr 24, 2025
use `diffrax.diffeqsolve(throw=False)` to delay raising integration related errors. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#398 · Opened Apr 15, 2025
Chaining `InferenceProcess` together Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#395 · Opened Apr 11, 2025
implement `sensitivity_analysis` helper method Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#393 · Opened Apr 11, 2025
Explore slow performance of `parallel=True` flag in the numpyro `Predictive` class. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#391 · Opened Apr 11, 2025
Document failure states Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#373 · 1 comment · Opened Mar 17, 2025
failed run tracking Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#372 · Opened Mar 17, 2025
Continue config validation iteration Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#369 · Opened Mar 10, 2025
documenting configuration flexibility and limitations on parsing Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

CDCgov/DynODE#367 · 1 comment · Opened Mar 7, 2025
Document common solver and inference errors and their causes Open

CDCgov/DynODE#365 · 1 assignee · Opened Mar 6, 2025
`beta_coef(self, t)` returns incorrect values Open

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

CDCgov/DynODE#321 · Opened Jan 10, 2025
ensure reproducibility and simplify the process of loading old jobs Open

enhancement enterprise_practices

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#287 · Opened Oct 24, 2024
Sensitivity analysis for the introduction mechanism Open

experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#283 · 1 comment · Opened Oct 22, 2024
create immunity visualization of simulated populations Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 28/100

CDCgov/DynODE#269 · 1 comment · Opened Oct 8, 2024
Calculate pointwise log-likelihoods and LOO elpd at the end of fitting Open

enhancement

CDCgov/DynODE#266 · 2 comments · 1 reaction · 1 assignee · Opened Oct 5, 2024
Test SVI for a model where we have NUTS results Open

enhancement experiment

Difficulty 4/5 3-5 days Newbie friendliness 30/100

CDCgov/DynODE#258 · 3 comments · Opened Oct 1, 2024
Ideas to simplify the generative model for variant data Open

enhancement experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#252 · 7 comments · 1 reaction · Opened Sep 24, 2024
Prior predictive checking: especially seasonal burden Open

enhancement experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#251 · 2 comments · Opened Sep 24, 2024
Using `bayeux` to organize `numpyro` models and access features Open

enhancement wontfix

Difficulty 5/5 Over a week Newbie friendliness 20/100

CDCgov/DynODE#244 · 6 comments · 1 reaction · Opened Aug 28, 2024
Build a stripped down version of the sampler/solver to see what is reducing our performance if anything Open

experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#231 · 4 comments · 1 reaction · Opened Aug 19, 2024
Get API docs up Open

documentation

CDCgov/DynODE#217 · 2 comments · 1 reaction · 1 assignee · Opened Aug 12, 2024
look into mid-fit reporting of metrics Open

experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#212 · 3 comments · Opened Aug 2, 2024
Interesting and probably unwanted behaviour for `strain_interaction_to_cross_immunity` Open

wontfix

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/DynODE#186 · 6 comments · Opened Jul 5, 2024
Experiments to try different AD systems Open

experiment

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#179 · Opened Jun 19, 2024
More consideration on IHR priors? Open

experiment question

Difficulty 5/5 Over a week Newbie friendliness 30/100

CDCgov/DynODE#161 · 2 comments · Opened Jun 4, 2024
consult SMEs on our waning and cross-immunity models Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

CDCgov/DynODE#122 · 5 comments · 1 reaction · Opened Apr 23, 2024
vaccinate exposed populations rather than susceptible only Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#92 · 2 comments · Opened Apr 2, 2024
Contact Matrix Swapping Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

CDCgov/DynODE#74 · Opened Mar 12, 2024
Add births and deaths to the model Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

CDCgov/DynODE#70 · 3 comments · Opened Mar 11, 2024
Avoid deep copying? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/DynODE#64 · 2 comments · Opened Mar 6, 2024

CDCgov/DynODE

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