Owner
CDCgov
64 indexed repositories · View on GitHub
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phoenix
🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
Python · 112 stars
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cdc-open-viz
CDC OpenViz is a library of React packages for data visualization.
TypeScript · 55 stars
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wastewater-informed-covid-forecasting
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
R · 51 stars
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template
Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.
41 stars
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Rust · 36 stars
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ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case ...
R · 32 stars
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irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
Perl · 29 stars
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PyRenew
Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
Python · 29 stars
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covid19-forecast-hub
A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory COVID-19 hospital a...
28 stars
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Mira
MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation
Python · 25 stars
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Julia · 23 stars
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Nextflow · 22 stars
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dibbs-query-connector
A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
PLpgSQL · 18 stars
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cfa-stf-routine-forecasting
Models and infrastructure for routine forecasting of respiratory disease burden
Python · 16 stars
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Rnssp-rmd-templates
Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhan...
R · 14 stars
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dibbs-ecr-viewer
DIBBS eCR Viewer
HTML · 14 stars
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DynODE
CDC/CFA/Predict/Scenarios ODE Modeling Framework
Python · 13 stars
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R · 13 stars
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phylophoenix
🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
Python · 12 stars
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Rnssp-shiny-apps
Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.
R · 11 stars
- 44 more repositories live on View on GitHub
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model pyrenew
Difficulty 3/5 1-2 days Newbie friendliness 68/100
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Difficulty 3/5 1-2 days Newbie friendliness 58/100
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CDCgov/cfa-cloudops#291 · 1 assignee ·
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Epic
Difficulty 5/5 Over a week Newbie friendliness 35/100
CDCgov/cfa-cloudops#290 ·
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CDCgov/cfa-stf-forecasttools#251 · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 30/100
CDCgov/covid19-forecast-hub#1876 ·
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CDCgov/hubhelpr#270 · 1 comment · 2 reactions · 1 assignee ·
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Implement multiverse Open
Difficulty 5/5 Over a week Newbie friendliness 25/100
CDCgov/cfa-vap-hm#32 ·
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CDCgov/forecasttools#267 · 1 comment · 1 reaction · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
CDCgov/cfa-stf-routine-forecasting#1315 · 3 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Low Severity Bug: Universal
Difficulty 4/5 3-5 days Newbie friendliness 38/100
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
CDCgov/cfa-simulator#94 ·
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Difficulty 3/5 1-2 days Newbie friendliness 66/100
CDCgov/cfa-simulator#93 ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
CDCgov/cfa-simulator#92 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 35/100
CDCgov/cfa-flu-simulator#79 ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
CDCgov/cfa-simulator#91 ·
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tech debt
Difficulty 3/5 1-2 days Newbie friendliness 62/100
CDCgov/dibbs-ecr-viewer#1766 ·
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Pregnancy-related dateTime extensions fail FHIR regex validation due to missing timezone offset Opentech debt
Difficulty 4/5 3-5 days Newbie friendliness 55/100
CDCgov/dibbs-ecr-viewer#1765 ·
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tech debt
CDCgov/dibbs-ecr-viewer#1764 · 1 assignee ·
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CDCgov/sg-monitoring-report#210 · 1 assignee ·
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CDCgov/covid19-forecast-hub#1853 · 1 comment · 2 assignees ·
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Difficulty 2/5 1-3 hours Newbie friendliness 78/100
CDCgov/rsv-forecast-hub#575 · 1 reaction ·
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
CDCgov/Rnssp-rmd-templates#25 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
CDCgov/cfa-flu-simulator#78 ·
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CDCgov/cfa-catalog-pub#79 · 7 comments · 1 reaction · 1 assignee ·
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🐛 bug FHIR conversion required
Difficulty 3/5 1-2 days Newbie friendliness 78/100
CDCgov/dibbs-ecr-viewer#1762 ·
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Difficulty 4/5 3-5 days Newbie friendliness 55/100
CDCgov/cfa-flu-simulator#75 ·
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CDCgov/dibbs-ecr-diff#129 · 1 assignee ·
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CDCgov/cfa-stf-routine-forecasting#1298 · 1 assignee ·
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dibbs-ecr-refiner
Difficulty 4/5 3-5 days Newbie friendliness 25/100
CDCgov/dibbs-ecr-refiner#1790 ·
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Difficulty 5/5 Over a week Newbie friendliness 30/100
CDCgov/cfa-stf-routine-forecasting#1291 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
CDCgov/cfa-stf-routine-forecasting#1290 · 2 comments ·
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Markdown formatting Open
Difficulty 3/5 1-2 days Newbie friendliness 42/100
CDCgov/cfa-flu-simulator#70 · 1 comment ·
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CDCgov/cfa-cloudops#287 · 1 assignee ·
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CDCgov/covid19-forecast-hub#1844 · 4 comments · 1 reaction · 1 assignee ·
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CDCgov/rsv-forecast-hub#573 · 3 comments · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
CDCgov/cfa-epimodel#24 ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
CDCgov/cfa-epimodel#23 ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
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CDCgov/dibbs-ecr-diff#123 · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 15/100
CDCgov/dibbs-ecr-diff#122 ·
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
CDCgov/dibbs-ecr-diff#121 ·
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Difficulty 3/5 1-2 days Newbie friendliness 62/100
CDCgov/forecasttools#266 ·
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CDCgov/dibbs-ecr-diff#120 · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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dibbs-ecr-refiner
CDCgov/dibbs-ecr-refiner#1785 · 1 assignee ·
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dibbs-ecr-refiner
CDCgov/dibbs-ecr-refiner#1784 · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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