CDCgov / CDCgov/PyRenew

Update MultiSignalModel API to allow for time-varying ascertainment

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model pyrenew
Dominant language
Python
Stars
29
Forks
9
Avg merge
9d 9h
Merged PRs (30d)
8

Description

The current Ascertainment implementations assume a scalar ascertainment but time-varying ascertainment specifies a temporal process.

MultiSignalModel computes the shared model-axis length and first_day_dow, but calls each registered AscertainmentModel.sample() without passing either value. This prevents ascertainment models with temporal processes from producing full-axis, calendar-aligned trajectories, despite the AscertainmentModel.sample(**kwargs) contract allowing model-context arguments.

MultiSignalModel should pass n_timepoints and first_day_dow when sampling ascertainment models and include ascertainment components when determining whether obs_start_date is required. Existing scalar ascertainment implementations already accept **kwargs, so this can be backward-compatible.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start at MultiSignalModel and trace how it computes the shared model-axis length, first_day_dow, and obs_start_date requirements before calling AscertainmentModel.sample(). Check the existing scalar ascertainment implementations and their tests, then verify that temporal models receive n_timepoints and first_day_dow while scalar implementations remain compatible.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend-api-design
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Active
Clarity
Mostly clear
Newbie friendliness
68/100

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