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CDCgov

64 indexed repositories · View on GitHub

• phoenix

  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Python · 112 stars

• cdc-open-viz

  CDC OpenViz is a library of React packages for data visualization.

  TypeScript · 55 stars

• wastewater-informed-covid-forecasting

  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

  R · 51 stars

• template

  Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

  41 stars

• ixa

  Rust · 36 stars

• ww-inference-model

  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case ...

  R · 32 stars

• irma

  IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.

  Perl · 29 stars

• PyRenew

  Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

  Python · 29 stars

• covid19-forecast-hub

  A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory COVID-19 hospital a...

  28 stars

• Mira

  MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation

  Python · 25 stars

• Rt-without-renewal

  Julia · 23 stars

• Mira-nf

  Nextflow · 22 stars

• dibbs-query-connector

  A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN

  PLpgSQL · 18 stars

• cfa-stf-routine-forecasting

  Models and infrastructure for routine forecasting of respiratory disease burden

  Python · 16 stars

• Rnssp-rmd-templates

  Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhan...

  R · 14 stars

• dibbs-ecr-viewer

  DIBBS eCR Viewer

  HTML · 14 stars

• DynODE

  CDC/CFA/Predict/Scenarios ODE Modeling Framework

  Python · 13 stars

• cfa-epinow2-pipeline

  R · 13 stars

• phylophoenix

  🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

  Python · 12 stars

• Rnssp-shiny-apps

  Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.

  R · 11 stars

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