Contact Matrix Swapping
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- Dominant language
- Python
- Stars
- 13
- Forks
- 3
- Avg merge
- 19h 43m
- Merged PRs (30d)
- 1
Description
Currently we use a single averaged contact matrix to define mixing patterns. Implement a system for swapping between contact matrices based on date this will likely follow a similar structure to a piecewise beta_coef() modifier where some function like AbstractParameters.contact_matrix(t) will be responsible for returning the correct contact matrix for some time point t.
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing AbstractParameters and the existing piecewise beta_coef() modifier mentioned in the issue. Determine how date-based parameter selection is represented and define the expected contact_matrix(t) behavior, including how completion will be tested across time points.
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Assessment
- Tech stack
- python
- Domain
- backend
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100