Owner
BlueBrain
39 indexed repositories · View on GitHub
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nexus
Blue Brain Nexus - A knowledge graph for data-driven science
Scala · 301 stars
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NeuroMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne...
Python · 138 stars
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nexus-forge
Building and Using Knowledge Graphs made easy
Python · 52 stars
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Tide
Tiled Interactive Display Environment
C++ · 50 stars
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VessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels...
Python · 50 stars
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MOOC-neurons-and-synapses-2017
Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open Course
Jupyter Notebook · 44 stars
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Ultraliser
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i...
C++ · 36 stars
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BlueGraph
Python framework for graph analytics and co-occurrence analysis
Python · 34 stars
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Deflect
C++ library for building applications to stream pixels to Tide
C++ · 25 stars
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Brion
Blue Brain C++ File IO Library
C++ · 23 stars
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Atlas-Download-Tools
Search, download, and prepare brain atlas data.
Python · 17 stars
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EModelRunner
Runs cells from stand-alone packages.
Python · 16 stars
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BluePyMM
Blue Brain Python Cell Model Management
Python · 13 stars
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atlas-alignment
Blue Brain multi-modal registration and alignment toolbox
Python · 12 stars
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morphoclass
Neuronal morphology preparation and classification using Machine Learning.
Python · 12 stars
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Jupyter Notebook · 11 stars
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Long-range-micro-connectome
BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
Python · 10 stars
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Python · 10 stars
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nexus-bbp-domains
BBP domains specification (schemas, vocabularies)
Scala · 9 stars
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Python · 9 stars
- 19 more repositories live on View on GitHub
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in progress ontologies
BlueBrain/nexus-bbp-domains#63 · 0 comments · 0 reactions · 1 assignee ·
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bug coreschemas next
BlueBrain/nexus-bbp-domains#93 · 0 comments · 0 reactions · 1 assignee ·
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coreschemas next ontologies
BlueBrain/nexus-bbp-domains#94 · 0 comments · 0 reactions · 1 assignee ·
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backlog coreschemas new
BlueBrain/nexus-bbp-domains#95 · 0 comments · 0 reactions · 1 assignee ·
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coreschemas enhancement next
BlueBrain/nexus-bbp-domains#96 · 0 comments · 0 reactions · 2 assignees ·
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in progress new ontologies
BlueBrain/nexus-bbp-domains#100 · 5 comments · 0 reactions · 4 assignees ·
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Map the current brain parcellation scheme ontologies used in bbp with the one obtained from NIF Openbacklog ontologies
BlueBrain/nexus-bbp-domains#101 · 0 comments · 0 reactions · 2 assignees ·
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in progress ontologies
BlueBrain/nexus-bbp-domains#102 · 2 comments · 0 reactions · 3 assignees ·
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atlas documentation enhancement
BlueBrain/nexus-bbp-domains#104 · 0 comments · 0 reactions · 1 assignee ·
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documentation enhancement morphology
BlueBrain/nexus-bbp-domains#105 · 0 comments · 0 reactions · 1 assignee ·
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documentation electrophysiology enhancement
BlueBrain/nexus-bbp-domains#106 · 0 comments · 0 reactions · 1 assignee ·
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documentation enhancement in progress
BlueBrain/nexus-bbp-domains#107 · 0 comments · 0 reactions · 1 assignee ·
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atlas backlog enhancement
BlueBrain/nexus-bbp-domains#108 · 0 comments · 0 reactions · 1 assignee ·
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atlas next
BlueBrain/nexus-bbp-domains#109 · 0 comments · 0 reactions · 1 assignee ·
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atlas review
BlueBrain/nexus-bbp-domains#110 · 0 comments · 0 reactions · 1 assignee ·
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coreschemas enhancement
BlueBrain/nexus-bbp-domains#111 · 0 comments · 0 reactions · 1 assignee ·
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enhancement experiment next
BlueBrain/nexus-bbp-domains#127 · 0 comments · 0 reactions · 3 assignees ·
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enhancement next
BlueBrain/nexus-bbp-domains#153 · 0 comments · 0 reactions · 2 assignees ·
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electrophysiology experiment morphology
BlueBrain/nexus-bbp-domains#172 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
BlueBrain/nexus-bbp-domains#177 · 0 comments · 0 reactions · 1 assignee ·
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How to attach "what is being modelled (ion channel, brain region,..." to a model (emodel, ...)" Open
BlueBrain/nexus-bbp-domains#179 · 2 comments · 0 reactions · 0 assignees ·
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BlueBrain/nexus-bbp-domains#193 · 0 comments · 0 reactions · 1 assignee ·
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review
BlueBrain/nexus-bbp-domains#194 · 0 comments · 0 reactions · 1 assignee ·
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BlueBrain/nexus-bbp-domains#207 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/nexus-bbp-domains#208 · 0 comments · 0 reactions · 0 assignees ·
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Discuss Minor Postponed
BlueBrain/covid-19-find#206 · 1 comment · 0 reactions · 0 assignees ·
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Discuss Postponed
BlueBrain/covid-19-find#211 · 0 comments · 0 reactions · 0 assignees ·
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Minor Postponed
BlueBrain/covid-19-find#214 · 0 comments · 0 reactions · 1 assignee ·
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enhancement Postponed
BlueBrain/covid-19-find#219 · 0 comments · 0 reactions · 0 assignees ·
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Aurelien enhancement Minor Postponed
BlueBrain/covid-19-find#239 · 0 comments · 0 reactions · 0 assignees ·
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enhancement Postponed
BlueBrain/covid-19-find#241 · 0 comments · 0 reactions · 1 assignee ·
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Postponed
BlueBrain/covid-19-find#296 · 0 comments · 0 reactions · 1 assignee ·
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Aurelien enhancement Postponed
BlueBrain/covid-19-find#298 · 0 comments · 0 reactions · 0 assignees ·
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enhancement Postponed
BlueBrain/covid-19-find#300 · 0 comments · 0 reactions · 0 assignees ·
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enhancement Postponed
BlueBrain/covid-19-find#319 · 0 comments · 0 reactions · 1 assignee ·
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Postponed
BlueBrain/covid-19-find#354 · 0 comments · 0 reactions · 1 assignee ·
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Minor Postponed
BlueBrain/covid-19-find#356 · 0 comments · 0 reactions · 1 assignee ·
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Bubble graph OpenDiscuss Postponed
BlueBrain/covid-19-find#450 · 1 comment · 0 reactions · 1 assignee ·
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bug
BlueBrain/covid-19-find#476 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
BlueBrain/covid-19-find#477 · 0 comments · 0 reactions · 1 assignee ·
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BlueBrain/atlas-annotation#10 · 0 comments · 1 reaction · 0 assignees ·
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BlueBrain/atlas-annotation#19 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/atlas-annotation#24 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/atlas-annotation#31 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/atlas-annotation#32 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/nexus-cli#32 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/Atlas-Download-Tools#8 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/Atlas-Download-Tools#10 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/Atlas-Download-Tools#12 · 0 comments · 0 reactions · 0 assignees ·
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BlueBrain/Atlas-Download-Tools#22 · 1 comment · 0 reactions · 1 assignee ·