BlueBrain/VessMorphoVis

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A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.

Stars: 50
Forks: 6
Open beginner issues: 0
Indexed issues: 40

Dominant language: Python
License: GPL-3.0
Last GitHub push: Dec 14, 2023
Latest indexed: Sep 14, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

40 open issues indexed

Adding support to bridge disconnected samples. Open

BlueBrain/VessMorphoVis#2 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Fix samples with radii less than a given threshold Open

BlueBrain/VessMorphoVis#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Section connectivity data. Open

enhancement

BlueBrain/VessMorphoVis#9 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Radii unififcation Open

enhancement

BlueBrain/VessMorphoVis#10 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Further Connected Section options Open

BlueBrain/VessMorphoVis#12 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding support to read and write data in Pajeck. Open

enhancement

BlueBrain/VessMorphoVis#15 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Extending the VMV format to load simulation data. Open

BlueBrain/VessMorphoVis#17 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Center the loaded VMV files Open

BlueBrain/VessMorphoVis#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Implement a point cloud visualizer Open

enhancement

BlueBrain/VessMorphoVis#20 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Feature Request: logarithmic bin limits for color-coding Open

BlueBrain/VessMorphoVis#22 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Feature Request: extensible color-coding Open

enhancement

BlueBrain/VessMorphoVis#24 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Feature Request: area-weighted analysis Open

enhancement

BlueBrain/VessMorphoVis#25 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
3D rendering Open

enhancement

BlueBrain/VessMorphoVis#26 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Issue: discontinuous colormap for 3D directions (angle vs. sine) Open

BlueBrain/VessMorphoVis#27 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Feature Request: Color coded direction (2D color space: aligned to viewing angle or the perpendicular plane) Open

BlueBrain/VessMorphoVis#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Changing from visualizing simulation to visualizing static structures does not provide original color Open

bug

BlueBrain/VessMorphoVis#29 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Gallery Open

documentation

BlueBrain/VessMorphoVis#30 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Plotting morphologies with radius above or below a given threshold Open

enhancement

BlueBrain/VessMorphoVis#34 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Analysis network tortuosity Open

enhancement

BlueBrain/VessMorphoVis#35 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Draw the bounding box of a given network in the morphology toolbox Open

enhancement

BlueBrain/VessMorphoVis#36 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Center the bevel objects where the morphology is drawn Open

bug enhancement

BlueBrain/VessMorphoVis#37 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Visualize full brain morphologies with huge sizes Open

enhancement

BlueBrain/VessMorphoVis#41 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Rendering of isometric views of the datasets Open

enhancement

BlueBrain/VessMorphoVis#42 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding support to allow the user to select a set of section with a radius range to visualize Open

BlueBrain/VessMorphoVis#43 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Adding support to export a new morphology after fixing existing artifcats Open

enhancement

BlueBrain/VessMorphoVis#44 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Render XYZ composition in the same image as a collage Open

enhancement

BlueBrain/VessMorphoVis#45 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Keep the samples list in the morphology structure Open

enhancement

BlueBrain/VessMorphoVis#46 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add LTS support to VessMorphoVis with Blender 3.3.2 Open

BlueBrain/VessMorphoVis#48 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Fix the setup script for macOS installation with new machines Open

bug

BlueBrain/VessMorphoVis#49 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Installing the addon Open

BlueBrain/VessMorphoVis#56 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
MorphIO cannot be installed on macOSX Open

BlueBrain/VessMorphoVis#57 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
CLI Bugs Open

BlueBrain/VessMorphoVis#58 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Draw percentage of the given dataset Open

enhancement

BlueBrain/VessMorphoVis#59 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Color-coding sections on a point-by-point basis. Open

enhancement

BlueBrain/VessMorphoVis#63 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Random color coding of the different objects in the morphology Open

enhancement

BlueBrain/VessMorphoVis#64 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding support to add geometric noise on the surfaces of the resulting meshes Open

enhancement

BlueBrain/VessMorphoVis#65 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add VMV export option in the Morphology Visualization toolbox. Open

enhancement

BlueBrain/VessMorphoVis#66 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add an option to draw a simplified version of the morphology Open

enhancement

BlueBrain/VessMorphoVis#67 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Integration of mesh optimization code in NMV and VMV Open

BlueBrain/VessMorphoVis#68 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Isolate the optional dependencies Open

bug enhancement

BlueBrain/VessMorphoVis#70 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026

BlueBrain/VessMorphoVis

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