BlueBrain/Atlas-Download-Tools

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Search, download, and prepare brain atlas data.

Stars: 17
Forks: 8
Open beginner issues: 0
Indexed issues: 27

Dominant language: Python
License: LGPL-3.0
Last GitHub push: Mar 10, 2023
Latest indexed: Sep 14, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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27 open issues indexed

Get rid of dependencies (cv2, matplotlib, pandas, etc.) Open

BlueBrain/Atlas-Download-Tools#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Consider creating a "Volume" class Open

BlueBrain/Atlas-Download-Tools#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Increase coverage of tests Open

BlueBrain/Atlas-Download-Tools#12 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Move dev code for AIBS true mapping to repo Open

BlueBrain/Atlas-Download-Tools#22 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Slice Nissl with same angle as raw coronal/sagittal slices Open

BlueBrain/Atlas-Download-Tools#23 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add functionalities for spinal-cord dataset Open

BlueBrain/Atlas-Download-Tools#24 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Comprehensive explanation of `download_dataset` Open

BlueBrain/Atlas-Download-Tools#33 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
Implement norm with `np.hypot` Open

BlueBrain/Atlas-Download-Tools#45 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Custom refspace dimensions Open

BlueBrain/Atlas-Download-Tools#47 · 2 comments · 2 reactions · 0 assignees · Indexed Sep 14, 2026
Decide which parts of the RMA spec to implement. Open

BlueBrain/Atlas-Download-Tools#48 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
Custom strategy to determine the slice coordinate in the reference space Open

BlueBrain/Atlas-Download-Tools#49 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Determine `donwsample_img` automatically Open

BlueBrain/Atlas-Download-Tools#51 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Multiprocessing for dataset download Open

BlueBrain/Atlas-Download-Tools#53 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Decide for monospaced text syntax in RST files Open

BlueBrain/Atlas-Download-Tools#61 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
Avoid recomputatation of `transformation` inside of `DisplacementField.warp` Open

BlueBrain/Atlas-Download-Tools#64 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clean up pytest markers Open

BlueBrain/Atlas-Download-Tools#65 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Control the logging level in the CLI Open

BlueBrain/Atlas-Download-Tools#68 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
get_corners_in_ref_space: use affine transformations instead of queries Open

BlueBrain/Atlas-Download-Tools#69 · 2 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
Update `docs` with new API Open

documentation

BlueBrain/Atlas-Download-Tools#81 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Investigate 3D expression grid (part of the Allen API) Open

BlueBrain/Atlas-Download-Tools#86 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Download of annotated atlases (part of the Allen API) Open

BlueBrain/Atlas-Download-Tools#87 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Dedicated `CLI` section in the docs Open

documentation

BlueBrain/Atlas-Download-Tools#88 · 0 comments · 2 reactions · 0 assignees · Indexed Sep 14, 2026
atldld dataset download show numeric plane of section instead of text Open

BlueBrain/Atlas-Download-Tools#93 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
Uncaught network problem exceptions in CLI dataset download Open

BlueBrain/Atlas-Download-Tools#94 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add the "downloads faithful dataset" CLI command Open

BlueBrain/Atlas-Download-Tools#95 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Some RMA queries never return all results Open

BlueBrain/Atlas-Download-Tools#98 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Make `get_experiment_list_from_gene` case insensitive Open

BlueBrain/Atlas-Download-Tools#106 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

BlueBrain/Atlas-Download-Tools

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