BlueBrain / BlueBrain/Atlas-Download-Tools

Custom refspace dimensions

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#47 2 comments 2 reactions 0 assignees View on GitHub
Dominant language
Python
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Description

We currently hardcode the respace to be (in microns). I guess because it is the canonical setup.

```python
refspace = (
("coronal", (0, 13200),
("transverse", (0, 8000),
("sagittal", (0, 11400),
)
```
The problem is that sometimes parts of images are cut off after synchronization. The cleanest solution is to just allow for dynamic resizing of the refspace. Something like.

```python
refspace = (
("coronal", (c_max, c_min),
("transverse", (t_min, t_max),
("sagittal", (s_min, s_max),
)
```

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