AllenNeuralDynamics

AllenNeuralDynamics/aind-metadata-mapper

Repository to help gather and map metadata from different sources

Stars: 0
Forks: 2
Open beginner issues: 0
Indexed issues: 37
Avg merge: 1d 7h
Merged PRs (30d): 1

Dominant language: Python
License: MIT
Last GitHub push: Sep 11, 2026
Latest indexed: Sep 13, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

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36 open issues indexed

Extract metadata from mesoscope rig acquisition files Open

AllenNeuralDynamics/aind-metadata-mapper#24 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Stimulus epoch generation for multiplane ophys sessions Open

AllenNeuralDynamics/aind-metadata-mapper#89 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
example script for U19 ETL Open

AllenNeuralDynamics/aind-metadata-mapper#94 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Optimize Integration Tests Open

AllenNeuralDynamics/aind-metadata-mapper#107 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Integration test for Bruker package Open

AllenNeuralDynamics/aind-metadata-mapper#108 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Integration Test for FIP package Open

AllenNeuralDynamics/aind-metadata-mapper#109 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add Rewards Behavior to stim epochs based on Saskia's Feedback Open

enhancement

AllenNeuralDynamics/aind-metadata-mapper#150 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add CamstimEphysEtl to Gather Metadata Open

question

AllenNeuralDynamics/aind-metadata-mapper#176 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Create timestamps.npy file for unaligned data Open

AllenNeuralDynamics/aind-metadata-mapper#180 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Remove ml and ap fov coords from mesoscope session object Open

AllenNeuralDynamics/aind-metadata-mapper#197 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Power in mW to the session.json Open

AllenNeuralDynamics/aind-metadata-mapper#224 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Behavior stimulus table should include passive time period Open

AllenNeuralDynamics/aind-metadata-mapper#243 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Installation fails on macOS with Python 3.13 due to wavpack-numcodecs compatibility Open

AllenNeuralDynamics/aind-metadata-mapper#261 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add support for Python 3.12 and 3.13 testing Open

AllenNeuralDynamics/aind-metadata-mapper#263 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
fix: photostimulation trials mislabeled as spontaneous Open

AllenNeuralDynamics/aind-metadata-mapper#295 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Add support for optogenetic FIP sessions and improve file pattern detection Open

AllenNeuralDynamics/aind-metadata-mapper#298 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add session_type to Bergamo session model Open

AllenNeuralDynamics/aind-metadata-mapper#299 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add stimulus epoch for bci single neuron stim control Open

AllenNeuralDynamics/aind-metadata-mapper#306 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Define datasets for integration testing of metadata mapper Open

AllenNeuralDynamics/aind-metadata-mapper#308 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add a new behavior type for Bergamo Open

AllenNeuralDynamics/aind-metadata-mapper#309 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Modify mesoscope metadata mapper for deepdive data Open

AllenNeuralDynamics/aind-metadata-mapper#320 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Port pavlovian behavior extractor to aind-metadata-extractor Open

AllenNeuralDynamics/aind-metadata-mapper#331 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Port open ephys extractor to aind-metadata-extractor Open

AllenNeuralDynamics/aind-metadata-mapper#332 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Port dynamic routing extractor to aind-metadata-extractor Open

AllenNeuralDynamics/aind-metadata-mapper#335 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Port bruker extractor to aind-metadata-extractor Open

AllenNeuralDynamics/aind-metadata-mapper#336 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Update SmartSPIM acquisition to accommodate laser calibration Open

AllenNeuralDynamics/aind-metadata-mapper#343 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
multiplane-ophys QC z-drift local stack Open

AllenNeuralDynamics/aind-metadata-mapper#370 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add laser power mapping for each mesoscope plane Open

AllenNeuralDynamics/aind-metadata-mapper#372 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add functionality to ingest extracted output from Opto Fiber Benchmark epxerimental workflow and pass to mapper Open

AllenNeuralDynamics/aind-metadata-mapper#410 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Update fip mapper to use `acquisition_type` Open

AllenNeuralDynamics/aind-metadata-mapper#414 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Update FIP mapper to use passed patch_cable to fiber connection info Open

AllenNeuralDynamics/aind-metadata-mapper#416 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Multiplane-ophys V2: Map the mesoscope extracted data to an acquisition file Open

AllenNeuralDynamics/aind-metadata-mapper#438 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
GatherMetadataJob should accept multiple instrument_ids and ensure alphabetical order when merging Open

AllenNeuralDynamics/aind-metadata-mapper#448 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
GathereMetadataJob should automatically populate curriculum fields in StimulusEpoch Open

AllenNeuralDynamics/aind-metadata-mapper#465 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
GatherMetadataJob should raise an error when subject.sex or subject.genotype are null Open

AllenNeuralDynamics/aind-metadata-mapper#479 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
BaseMapper incorrectly cited in readme Open

AllenNeuralDynamics/aind-metadata-mapper#483 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

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