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AllenInstitute

39 indexed repositories · View on GitHub

• AllenSDK

  code for reading and processing Allen Institute for Brain Science data

  Jupyter Notebook · 398 stars

• bmtk

  Brain Modeling Toolkit

  Python · 335 stars

• abc_atlas_access

  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

  Jupyter Notebook · 121 stars

• openscope_databook

  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠...

  Python · 75 stars

• cell_type_mapper

  Repository for storing prototype functionality implementations for the BKP

  Python · 55 stars

• MIES

  Multichannel Igor Electrophysiology Suite

  IGOR Pro · 30 stars

• zarr_vectors

  a place to work on a specification for skeletons

  21 stars

• biofile-finder

  An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a...

  TypeScript · 21 stars

• biorealistic-v1-model

  Python · 17 stars

• microns_tutorial

  MICrONS databook and analysis tutorials

  HTML · 12 stars

• ZeroMQ-XOP

  The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format

  C · 10 stars

• vis

  Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

  TypeScript · 10 stars

• neuroanalysis

  Modular analysis tools for neurophysiology data

  Python · 9 stars

• AllenInstituteTaxonomy

  https://alleninstitutetaxonomy.readthedocs.io/en/latest/schema.html#schema

  R · 9 stars

• bmtk-workshop

  Jupyter Notebook · 8 stars

• spatial_compare

  package for comparing spatial transcriptomics datasets

  Jupyter Notebook · 7 stars

• BigFeta

  Big FeaTure Aligner: a scalable solution for feature alignment

  Python · 6 stars

• zarr-vectors-tools

  Tools and workflows based on the zarr-vectors-py API.

  Python · 6 stars

• serra

  A multi-material meshing library written in Rust

  Python · 5 stars

• ACE

  R Shiny app for comparison of annotations (e.g., cell type assignments)

  R · 4 stars

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