AllenInstitute / AllenInstitute/ConnectsCommonConnectivity
CellFeatureMeasurement: feature_set_id and unit are never generated
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Description
Problem: cell_features_schema.yaml declares feature_set_id and unit for CellFeatureMeasurement under slot_usage: but not under slots:. LinkML generates neither, so models.py lacks both fields — the documented "denormalized reference to the feature set" doesn't exist.
Fix: declare both under slots:; regenerate models.
Related: whether feature sets are project-scoped is #35 — don't silently add the ProjectScoped mixin here.
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Open cell_features_schema.yaml and inspect the CellFeatureMeasurement declarations under slot_usage and slots. Regenerate the models as the repository workflow specifies, then verify that models.py contains feature_set_id and unit without adding the ProjectScoped mixin.
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Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Active
- Clarity
- Clearly specified
- Newbie friendliness
- 88/100