Owner
AllenInstitute
39 indexed repositories · View on GitHub
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AllenSDK
code for reading and processing Allen Institute for Brain Science data
Jupyter Notebook · 398 stars
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bmtk
Brain Modeling Toolkit
Python · 335 stars
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abc_atlas_access
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
Jupyter Notebook · 121 stars
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openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠...
Python · 75 stars
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cell_type_mapper
Repository for storing prototype functionality implementations for the BKP
Python · 55 stars
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MIES
Multichannel Igor Electrophysiology Suite
IGOR Pro · 30 stars
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zarr_vectors
a place to work on a specification for skeletons
21 stars
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biofile-finder
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a...
TypeScript · 21 stars
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Python · 17 stars
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microns_tutorial
MICrONS databook and analysis tutorials
HTML · 12 stars
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ZeroMQ-XOP
The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format
C · 10 stars
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vis
Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
TypeScript · 10 stars
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neuroanalysis
Modular analysis tools for neurophysiology data
Python · 9 stars
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AllenInstituteTaxonomy
https://alleninstitutetaxonomy.readthedocs.io/en/latest/schema.html#schema
R · 9 stars
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Jupyter Notebook · 8 stars
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spatial_compare
package for comparing spatial transcriptomics datasets
Jupyter Notebook · 7 stars
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BigFeta
Big FeaTure Aligner: a scalable solution for feature alignment
Python · 6 stars
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zarr-vectors-tools
Tools and workflows based on the zarr-vectors-py API.
Python · 6 stars
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serra
A multi-material meshing library written in Rust
Python · 5 stars
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ACE
R Shiny app for comparison of annotations (e.g., cell type assignments)
R · 4 stars
- 19 more repositories live on View on GitHub
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Difficulty 3/5 1-2 days Newbie friendliness 74/100
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AllenInstitute/biofile-finder#964 · 1 assignee ·
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AnalysisBrowser Optimization SweepFormula
Difficulty 5/5 Over a week Newbie friendliness 25/100
AllenInstitute/MIES#2783 ·
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What is v2? Open
Difficulty 1/5 Under an hour Newbie friendliness 25/100
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What is v1? Open
Difficulty 5/5 Over a week Newbie friendliness 15/100
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Difficulty 5/5 Over a week Newbie friendliness 20/100
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Difficulty 2/5 1-3 hours Newbie friendliness 35/100
AllenInstitute/biofile-finder#958 ·
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UX
Difficulty 5/5 Over a week Newbie friendliness 35/100
AllenInstitute/biofile-finder#957 · 1 comment ·
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AllenInstitute/HMBA_WB_Atlas#33 · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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make 1.0 release Open
Difficulty 1/5 Under an hour Newbie friendliness 72/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 15/100
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
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AllenInstitute/AllenInstituteTaxonomy#17 · 1 assignee ·
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AllenInstitute/AllenInstituteTaxonomy#16 · 1 comment · 1 assignee ·
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AiT: Run an AI pass over the python AiT repo using co-pilot. Share review as issues and create PRs. Open
AllenInstitute/AllenInstituteTaxonomy#15 · 1 assignee ·
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bug
Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
AllenInstitute/biofile-finder#948 ·
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AllenInstitute/biofile-finder#947 · 1 assignee ·
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bug
Difficulty 1/5 Under an hour Newbie friendliness 92/100
AllenInstitute/AllenSDK#2783 ·
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SweepFormula
AllenInstitute/MIES#2779 · 7 comments · 1 assignee ·
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Difficulty 2/5 1-3 hours Newbie friendliness 88/100
AllenInstitute/biorealistic-v1-model#15 · 1 comment ·
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SweepFormula
AllenInstitute/MIES#2778 · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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AllenInstitute/AllenInstituteTaxonomy#14 · 2 assignees ·
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AllenInstitute/AllenInstituteTaxonomy#13 · 1 assignee ·
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TaxonomyService
AllenInstitute/AllenInstituteTaxonomy#12 · 1 assignee ·
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TaxonomyService
AllenInstitute/AllenInstituteTaxonomy#11 · 1 comment · 1 assignee ·
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TaxonomyService
AllenInstitute/AllenInstituteTaxonomy#10 · 1 comment · 1 assignee ·
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SweepFormula
Difficulty 5/5 Over a week Newbie friendliness 30/100
AllenInstitute/MIES#2777 ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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SweepFormula
Difficulty 5/5 Over a week Newbie friendliness 30/100
AllenInstitute/MIES#2775 ·
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SweepFormula
Difficulty 3/5 1-2 days Newbie friendliness 55/100
AllenInstitute/MIES#2774 ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
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AllenInstitute/standard_morph#16 · 1 comment · 2 assignees ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
AllenInstitute/biofile-finder#941 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 88/100
AllenInstitute/biofile-finder#934 · 1 reaction ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
AllenInstitute/biofile-finder#931 ·
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ABC Atlas links Open
Difficulty 2/5 1-3 hours Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
AllenInstitute/serra#1 · 5 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
AllenInstitute/biofile-finder#923 ·
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enhancement question schema
Difficulty 5/5 Over a week Newbie friendliness 25/100
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UX
Difficulty 5/5 Over a week Newbie friendliness 30/100
AllenInstitute/biofile-finder#922 · 6 comments ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 35/100
AllenInstitute/AllenSDK#2782 · 1 comment ·
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question schema
Difficulty 5/5 Over a week Newbie friendliness 30/100
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Update README Opendocumentation
Difficulty 3/5 1-2 days Newbie friendliness 48/100
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question
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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