mypyc-compiled extensions missing math library linking causing undefined symbol errors
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説明
Bug Report
When building mypy with mypyc enabled (MYPY_USE_MYPYC=1), the compiled C extensions are missing explicit linking to the math library (libm), causing undefined symbol errors for standard math functions.
[./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so]:
linux-vdso.so.1 (0x0000ffffb4c9c000)
libc.so.6 => /lib64/libc.so.6 (0x0000ffffb4632000)
/lib/ld-linux-aarch64.so.1 (0x0000ffffb4c4f000)
undefined symbol: sin (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
[./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so]:
linux-vdso.so.1 (0x0000ffff80b96000)
libc.so.6 => /lib64/libc.so.6 (0x0000ffff7ee32000)
/lib/ld-linux-aarch64.so.1 (0x0000ffff80b49000)
undefined symbol: sin (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
To Reproduce
PACKAGE_VERSION="v1.19.1"
ARCHIVE_NAME="${PACKAGE_VERSION}.tar.gz"
curl -fLO "https://github.com/python/mypy/archive/refs/tags/${ARCHIVE_NAME}"
tar xf "${ARCHIVE_NAME}"
cd "mypy-${PACKAGE_VERSION#v}"
export MYPY_USE_MYPYC="1"
pip3 install . -v -v -v --compile --no-deps --no-cache-dir --no-build-isolation --no-binary :all:
Expected Behavior
No unexpected undefined symbols
Actual Behavior
Unexpected undefined symbols
Your Environment
- OS: Amz Linux 2023 aarch64
- Python: 3.12.7
- mypy: 1.19.1
Proposed Solution
The math library needs to be added to the extension modules during the build process. A potential patch location is in setup.py after the extensions are created:
# After mypyc_build_ext() creates ext_modules, add math library
for ext in ext_modules:
if "m" not in ext.libraries:
ext.libraries.append("m")
However, this approach may over-link modules that don't need libm. A more precise solution would require:
- Identifying which specific mypyc-generated extensions actually use math functions
- Only adding
-lmto those specific extensions - This may require changes in mypyc itself to track which C math functions are used during compilation
Temporary Workaround is:
# Patch setup.py to add math library to all extensions
sed -i '
/log_trace=log_trace,$/,/^ assert ext_modules$/ {
/^ )$/ a\
\
for ext in ext_modules:\
if "m" not in ext.libraries:\
ext.libraries.append("m")
}
' "./setup.py"
コントリビューションガイド
はじめの一歩
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- issue 番号を参照したプルリクエストを送ります。
調査の方向性
setup.py の mypyc_build_ext() 周辺と ext_modules の作成処理から始め、影響を受ける環境で、ドキュメントに記載された pip コマンドを使って MYPY_USE_MYPYC=1 でビルドを再現します。生成された拡張のうちどれが libm を必要とするかを特定し、不要なリンクを可能な限り避けながら、ビルドされた拡張が未定義の数学シンボルなしでロードされることを確認します。
索引モデルが issue の本文から書いたものです。
評価
- 技術スタック
- python
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- build-system
- issue の種類
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- 4/5
- 見積もり時間
- 3〜5日
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- 初心者へのやさしさ
- 38/100