python / python/mypy

mypyc-compiled extensions missing math library linking causing undefined symbol errors

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bug
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Python
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Descripción

Bug Report
When building mypy with mypyc enabled (MYPY_USE_MYPYC=1), the compiled C extensions are missing explicit linking to the math library (libm), causing undefined symbol errors for standard math functions.

[./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so]:
    linux-vdso.so.1 (0x0000ffffb4c9c000)
    libc.so.6 => /lib64/libc.so.6 (0x0000ffffb4632000)
    /lib/ld-linux-aarch64.so.1 (0x0000ffffb4c4f000)
undefined symbol: sin	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log	(./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)

[./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so]:
    linux-vdso.so.1 (0x0000ffff80b96000)
    libc.so.6 => /lib64/libc.so.6 (0x0000ffff7ee32000)
    /lib/ld-linux-aarch64.so.1 (0x0000ffff80b49000)
undefined symbol: sin	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log	(./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)

To Reproduce

PACKAGE_VERSION="v1.19.1"
ARCHIVE_NAME="${PACKAGE_VERSION}.tar.gz"
curl -fLO "https://github.com/python/mypy/archive/refs/tags/${ARCHIVE_NAME}"
tar xf "${ARCHIVE_NAME}"
cd "mypy-${PACKAGE_VERSION#v}"

export MYPY_USE_MYPYC="1"
pip3 install . -v -v -v --compile --no-deps --no-cache-dir --no-build-isolation --no-binary :all:

Expected Behavior
No unexpected undefined symbols

Actual Behavior

Unexpected undefined symbols

Your Environment

  • OS: Amz Linux 2023 aarch64
  • Python: 3.12.7
  • mypy: 1.19.1

Proposed Solution

The math library needs to be added to the extension modules during the build process. A potential patch location is in setup.py after the extensions are created:

# After mypyc_build_ext() creates ext_modules, add math library
for ext in ext_modules:
    if "m" not in ext.libraries:
        ext.libraries.append("m")

However, this approach may over-link modules that don't need libm. A more precise solution would require:

  1. Identifying which specific mypyc-generated extensions actually use math functions
  2. Only adding -lm to those specific extensions
  3. This may require changes in mypyc itself to track which C math functions are used during compilation

Temporary Workaround is:

# Patch setup.py to add math library to all extensions
sed -i '
/log_trace=log_trace,$/,/^    assert ext_modules$/ {
    /^    )$/ a\
\
    for ext in ext_modules:\
        if "m" not in ext.libraries:\
            ext.libraries.append("m")
}
' "./setup.py"

Guía de contribución

Abrir la guía de contribución

Primeros pasos

  1. Lee el issue completo y luego la guía de contribución del proyecto.
  2. Comenta en el issue que vas a ocuparte — evita que dos personas hagan lo mismo.
  3. Haz un fork del repositorio y trabaja en una rama.
  4. Abre un pull request que haga referencia al número del issue.

Línea de trabajo

Comienza en setup.py, alrededor de mypyc_build_ext() y la creación de ext_modules; después, reproduce la compilación con MYPY_USE_MYPYC=1 usando el comando pip documentado en el entorno afectado. Determina qué extensiones generadas requieren libm y asegúrate de que las extensiones compiladas se carguen sin símbolos matemáticos indefinidos, evitando el enlazado innecesario cuando sea posible.

Escrito por el modelo de indexación a partir del texto del issue.

Evaluación

Stack tecnológico
python
Área
build-system
Tipo de issue
Error
Dificultad
4/5
Tiempo estimado
3-5 días
Estado de actividad
Estancado
Claridad
Bastante claro
Aptitud para principiantes
38/100

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