mypyc-compiled extensions missing math library linking causing undefined symbol errors
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Description
Bug Report
When building mypy with mypyc enabled (MYPY_USE_MYPYC=1), the compiled C extensions are missing explicit linking to the math library (libm), causing undefined symbol errors for standard math functions.
[./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so]:
linux-vdso.so.1 (0x0000ffffb4c9c000)
libc.so.6 => /lib64/libc.so.6 (0x0000ffffb4632000)
/lib/ld-linux-aarch64.so.1 (0x0000ffffb4c4f000)
undefined symbol: sin (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log (./lib/python3.12/site-packages/30fcd23745efe32ce681__mypyc.cpython-312-aarch64-linux-gnu.so)
[./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so]:
linux-vdso.so.1 (0x0000ffff80b96000)
libc.so.6 => /lib64/libc.so.6 (0x0000ffff7ee32000)
/lib/ld-linux-aarch64.so.1 (0x0000ffff80b49000)
undefined symbol: sin (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: cos (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: tan (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: sqrt (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: exp (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: fmod (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: pow (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
undefined symbol: log (./lib/python3.12/site-packages/3204bda914b7f2c6f497__mypyc.cpython-312-aarch64-linux-gnu.so)
To Reproduce
PACKAGE_VERSION="v1.19.1"
ARCHIVE_NAME="${PACKAGE_VERSION}.tar.gz"
curl -fLO "https://github.com/python/mypy/archive/refs/tags/${ARCHIVE_NAME}"
tar xf "${ARCHIVE_NAME}"
cd "mypy-${PACKAGE_VERSION#v}"
export MYPY_USE_MYPYC="1"
pip3 install . -v -v -v --compile --no-deps --no-cache-dir --no-build-isolation --no-binary :all:
Expected Behavior
No unexpected undefined symbols
Actual Behavior
Unexpected undefined symbols
Your Environment
- OS: Amz Linux 2023 aarch64
- Python: 3.12.7
- mypy: 1.19.1
Proposed Solution
The math library needs to be added to the extension modules during the build process. A potential patch location is in setup.py after the extensions are created:
# After mypyc_build_ext() creates ext_modules, add math library
for ext in ext_modules:
if "m" not in ext.libraries:
ext.libraries.append("m")
However, this approach may over-link modules that don't need libm. A more precise solution would require:
- Identifying which specific mypyc-generated extensions actually use math functions
- Only adding
-lmto those specific extensions - This may require changes in mypyc itself to track which C math functions are used during compilation
Temporary Workaround is:
# Patch setup.py to add math library to all extensions
sed -i '
/log_trace=log_trace,$/,/^ assert ext_modules$/ {
/^ )$/ a\
\
for ext in ext_modules:\
if "m" not in ext.libraries:\
ext.libraries.append("m")
}
' "./setup.py"
Guide de contribution
Ouvrir le guide de contribution
Par où commencer
- Lisez l'issue en entier, puis le guide de contribution du projet.
- Signalez en commentaire que vous la prenez — cela évite que deux personnes fassent le même travail.
- Forkez le dépôt et travaillez sur une branche.
- Ouvrez une pull request qui référence le numéro de l'issue.
Piste de recherche
Commencez dans setup.py, autour de mypyc_build_ext() et de la création de ext_modules, puis reproduisez la compilation avec MYPY_USE_MYPYC=1 en utilisant la commande pip documentée dans l’environnement concerné. Déterminez quelles extensions générées nécessitent libm et assurez-vous que les extensions compilées se chargent sans symboles mathématiques indéfinis, en évitant autant que possible l’édition de liens inutile.
Rédigé par le modèle d'indexation à partir du texte de l'issue.
Évaluation
- Stack technique
- python
- Domaine
- build-system
- Type d'issue
- Bug
- Difficulté
- 4/5
- Temps estimé
- 3-5 jours
- Activité
- À l'abandon
- Clarté
- Plutôt claire
- Accessibilité débutants
- 38/100