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pharmaverse

24 indexed repositories · View on GitHub

admiral
ADaM in R Asset Library

R · 318 stars
rtables
Reporting tables with R

R · 260 stars
tern
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials

R · 106 stars
ggsurvfit

R · 105 stars
cards
CDISC Analysis Results Data

R · 61 stars
cardinal
FDA Safety Tables and Figures

R · 60 stars
pharmaverse
Website: https://pharmaverse.org/

HTML · 57 stars
logrx
Tools to facilitate logging in a clinical environment with the goal of making code easily traceable and reproducible.

HTML · 48 stars
admiralonco
Oncology extension package for ADaM in R Asset Library (admiral)

R · 46 stars
blog
Blogging on the latest, greatest and most spectacular stuff happening around the pharmaverse

R · 44 stars
risk.assessr
Define quality variables for evaluating the risk associated with R packages.

HTML · 44 stars
aNCA
Shiny App to perform NCA on (pre-)clinical data

R · 44 stars
pharmaversesdtm
Test SDTM data for use within the pharmaverse family of packages

R · 39 stars
pharmaverseadam
Test ADaM data for use with pharmaverse

R · 36 stars
cardx
R Package to Supplement ARD Functions Found in {cards}

R · 23 stars
admiralophtha
Ophthalmology package extension of admiral

R · 22 stars
test.assessr
Assessing Package Test Reliability and Quality

HTML · 20 stars
formatters
A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination.

R · 20 stars
admiralpeds
Admiral Package Extension for Pediatric Clinical Trials

R · 16 stars
rtflite
Lightweight RTF composer for Python. Specializes in precise formatting of production-quality tables and figures.

Python · 13 stars
4 more repositories live on View on GitHub

Beginner friendly Everything

Open All

Follow-up minor improvements for `h_prepare_2x2_table()` Open

priority refactor

pharmaverse/tern#1530 · 1 assignee · Opened Sep 19, 2026
[Feature]: CRAN release 4.1.3 Open

documentation enhancement

pharmaverse/risk.assessr#80 · 1 assignee · Opened Sep 18, 2026
Placeholder from Hans Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

pharmaverse/autoslider.core#139 · Opened Sep 18, 2026
Documentation: Investigate PCWG4 criteria Open

Documentation

Difficulty 3/5 1-2 days Newbie friendliness 62/100

pharmaverse/admiralonco#362 · Opened Sep 17, 2026
Enhancement: Add merge-conflict resolution skill Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 86/100

pharmaverse/aNCA#1490 · Opened Sep 16, 2026
[New package request] coreval Open

new package

Difficulty 5/5 Over a week Newbie friendliness 35/100

pharmaverse/pharmaverse#454 · Opened Sep 16, 2026
Add qs_neuro SDTM test dataset for Alzheimer's cognitive assessments Open

pharmaverse/pharmaversesdtm#258 · 2 comments · 1 assignee · Opened Sep 16, 2026
Create function "compute_CenTauR()" and showcase in ADTPET Open

on hold Phase 4

Difficulty 5/5 Over a week Newbie friendliness 35/100

pharmaverse/admiralneuro#142 · Opened Sep 15, 2026
Add complete `{tern}` workflow to Mantel-Fleiss vignette Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 72/100

pharmaverse/tern#1528 · Opened Sep 15, 2026
Proposal to extend formats_var to other analyze-like functions Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

pharmaverse/rtables#1121 · Opened Sep 14, 2026
[Feature]: delegate package install to pak Open

enhancement testing

pharmaverse/test.assessr#19 · 1 assignee · Opened Sep 14, 2026
CRAN bug report Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

pharmaverse/formatters#375 · Opened Sep 14, 2026
URGENT! Failed CRAN Checks: 2026-09-13 Open

pharmaverse/tern#1527 · 3 assignees · Opened Sep 13, 2026
Export RefFootnote() Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

pharmaverse/rtables#1120 · Opened Sep 12, 2026
Add Eosinophilia to the CTCAE v5 and v6 grading metadata Open

pharmaverse/admiral#3191 · 3 comments · 1 assignee · Opened Sep 11, 2026
Documentation: Add ADGA (Geographic Atrophy) vignette Open

documentation

pharmaverse/admiralophtha#313 · 1 assignee · Opened Sep 11, 2026
Update to roxygen 8.1.0 Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

pharmaverse/admiralophtha#312 · 1 comment · Opened Sep 11, 2026
ADaM templates should use `derive_vars_merged_lookup()` over `derive_vars_merged()` when merging lookup table Open

Difficulty 2/5 1-3 hours Newbie friendliness 74/100

pharmaverse/admiralophtha#311 · Opened Sep 11, 2026
Enhancement: add GENDER and SPECIES to grouping variable auto-mapping Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 78/100

pharmaverse/aNCA#1486 · Opened Sep 10, 2026
Feature Request: Include standard errors of totals and counts for survey estimates Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

pharmaverse/cardx#362 · Opened Sep 9, 2026
Add adverse-event rate-and-count catalog tables (by SOC / preferred term) Open

new template

Difficulty 3/5 1-2 days Newbie friendliness 72/100

pharmaverse/cardinal#368 · Opened Sep 9, 2026
Consolidate use of {crane} shorthands across catalog templates Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 65/100

pharmaverse/cardinal#367 · Opened Sep 9, 2026
[Feature]: risk.assessr::get_security_vulnerabilities() returned data.frame does not contain the name of the package that is being checked Open

enhancement

pharmaverse/risk.assessr#76 · 1 comment · 1 assignee · Opened Sep 9, 2026
Unify the input interface of `h_prop_diff` and `h_prop_diff_test` Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 52/100

pharmaverse/tern#1520 · Opened Sep 8, 2026
Bug: Make ratio PPANMETH describe reference and multiplier settings Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 68/100

pharmaverse/aNCA#1484 · Opened Sep 8, 2026
Tag every dataset with admiral_df. Open

1.6 enhancement

pharmaverse/admiral#3186 · 1 assignee · Opened Sep 8, 2026
Feature Request: Implement `admiral_df` class and `summary()` override (Master Issue) Open

enhancement programming

pharmaverse/admiral#3185 · 1 comment · 1 reaction · 1 assignee · Opened Sep 8, 2026
use assertion instead of checkmate, drop checkmate Open

hackathon

Difficulty 4/5 3-5 days Newbie friendliness 68/100

pharmaverse/autoslider.core#134 · Opened Sep 8, 2026
replacing pipe from %>% to |> Open

good first issue hackathon

pharmaverse/autoslider.core#133 · 1 comment · 1 assignee · Opened Sep 8, 2026
Bug Report: `arg_match(call = )` in `ard_categorical_ci.R` is silently ignored — should be `error_call =` Open

Difficulty 1/5 Under an hour Newbie friendliness 92/100

pharmaverse/cardx#361 · 1 reaction · Opened Sep 8, 2026
Enhancement: Mark summary-excluded records in TLG listings Open

enhancement TLG

pharmaverse/aNCA#1482 · 1 assignee · Opened Sep 7, 2026
Documentation: Add algorithmic SMQs to OCCDS vignette Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 72/100

pharmaverse/admiral#3184 · 2 comments · Opened Sep 4, 2026
[New package request] r4subpharma Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

pharmaverse/pharmaverse#453 · Opened Sep 4, 2026
Cross-link related tables in catalog programming notes Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

pharmaverse/cardinal#362 · Opened Sep 3, 2026
[Feature]: delegate package install to `pak` Open

enhancement testing

pharmaverse/risk.assessr#75 · 1 assignee · Opened Sep 3, 2026
[Question]: get_security_vulnerabilities(ecosystem) Open

question

pharmaverse/risk.assessr#74 · 2 comments · 1 assignee · Opened Sep 3, 2026
[Bug]: `prop_diff_cmh()` treats missing strata as a valid stratum Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 50/100

pharmaverse/tern#1517 · 6 comments · Opened Sep 2, 2026
Refactor 2x2 table handling to use `h_prepare_2x2_table()` Open

refactor

Difficulty 4/5 3-5 days Newbie friendliness 48/100

pharmaverse/tern#1516 · Opened Sep 2, 2026
Add qs_neuro SDTM test dataset for Alzheimer's cognitive assessments Open

enhancement help wanted Phase 4

pharmaverse/admiralneuro#141 · 1 assignee · Opened Sep 2, 2026
Bug: Parameter Selection matrix silently ignores selections for metabolite/NA study types (METABFL label mismatch) Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 76/100

pharmaverse/aNCA#1471 · Opened Sep 2, 2026
Medical History template Open

good first issue hackathon

pharmaverse/autoslider.core#130 · 1 comment · 1 assignee · Opened Aug 31, 2026
Enhancement: Redesign ADPP Exclusions tab with integrated boxplots and red/yellow/orange exclusion coding Open

enhancement

pharmaverse/aNCA#1466 · 1 assignee · Opened Aug 31, 2026
Enhancement: Custom naming and per-study-type selection for Partial Interval Calculations Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 48/100

pharmaverse/aNCA#1463 · Opened Aug 31, 2026
Enhancement: Offer ROUTE as a "Group by" option in NCA descriptive statistics (and fix ROUTE join crash) Open

bug enhancement

Difficulty 4/5 3-5 days Newbie friendliness 68/100

pharmaverse/aNCA#1461 · Opened Aug 31, 2026
[Question]: Exporting helper for changing log threshold on tests Open

question

Difficulty 4/5 3-5 days Newbie friendliness 45/100

pharmaverse/teal.logger#128 · Opened Aug 31, 2026
Feature Request: Support `svyrep.design` (replicate-weight) survey objects Open

Difficulty 4/5 3-5 days Newbie friendliness 68/100

pharmaverse/cardx#355 · Opened Aug 30, 2026
Standardise formulation variable name DOSFRM -> FRMUL in mapping/app Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 76/100

pharmaverse/aNCA#1453 · Opened Aug 27, 2026
Enhancement: metadata-driven CDISC data-type validation + QC report on export Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 48/100

pharmaverse/aNCA#1451 · Opened Aug 27, 2026
Bump RoxygenNote to 8.1.0 Open

pharmaverse/admiralpeds#151 · 1 assignee · Opened Aug 26, 2026
Code TODO inventory and cleanup tracking Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

pharmaverse/aNCA#1447 · Opened Aug 26, 2026

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