pepkit/pephub

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A web API and database for biological sample metadata

Stars: 22
Forks: 2
Open beginner issues: 0
Indexed issues: 60

Dominant language: TypeScript
License: BSD-2-Clause
Last GitHub push: Jul 6, 2026
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

60 open issues indexed

Validation of huge (>10K samples) projects Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

pepkit/pephub#460 · Opened Jul 6, 2026
The README is hard to follow for deploying PEPhub locally Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

pepkit/pephub#445 · 6 comments · Opened Oct 3, 2025
Better authentication Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

pepkit/pephub#444 · 1 comment · Opened Sep 26, 2025
Ordering PEP csv by colunn Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

pepkit/pephub#443 · Opened Jul 10, 2025
Renaming PEP does not show up in history of changes Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

pepkit/pephub#442 · 1 reaction · Opened May 22, 2025
Forking PEP sometimes gives unknown error Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

pepkit/pephub#441 · Opened May 21, 2025
Make archiving automatic Open

priority high

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#440 · Opened May 21, 2025
derived sample_names cannot be modified Open

bug server-side

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#439 · Opened May 20, 2025
schemas should be sorted by date, rather than alphabetically Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pepkit/pephub#437 · Opened May 20, 2025
Update geo archive loading text Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

pepkit/pephub#435 · Opened Apr 29, 2025
Visual bug with table and `0` values Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pepkit/pephub#433 · 1 comment · Opened Apr 18, 2025
Add privacy to the schemas Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#430 · Opened Mar 31, 2025
Forking schemas Open

question

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#429 · Opened Mar 31, 2025
schema submission demo Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pepkit/pephub#424 · Opened Mar 25, 2025
More Sample Table Issues Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#416 · 3 comments · Opened Mar 11, 2025
PEPhub wont save my PEP Open

bug help wanted

Difficulty 3/5 1-2 days Newbie friendliness 48/100

pepkit/pephub#414 · 2 comments · Opened Jan 27, 2025
Cancel button should cancel OR be called something else Close Open

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

pepkit/pephub#413 · 1 comment · Opened Dec 10, 2024
Performance with background tasks Open

brainstorming

Difficulty 4/5 3-5 days Newbie friendliness 25/100

pepkit/pephub#396 · Opened Sep 20, 2024
Great opportunity to use `@tanstack/react-table`... really a fantastic library Open

UI/UX

Difficulty 5/5 Over a week Newbie friendliness 20/100

pepkit/pephub#390 · Opened Sep 18, 2024
Add archiving of schemas Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#386 · Opened Sep 10, 2024
Evaluate JWT at the correct time Open

priority low

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#385 · Opened Sep 3, 2024
Views have a weird relationship with handsontable views Open

priority low

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#382 · Opened Aug 30, 2024
Project name shouldn't be inside the project Open

priority low

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#381 · Opened Aug 30, 2024
Fix mobile views Open

priority low UI/UX

pepkit/pephub#378 · 1 assignee · Opened Aug 28, 2024
How do we convert the `handsontable` sample table representation to a PEP-compatible sample table representation? Open

likely solved

pepkit/pephub#376 · 3 comments · 1 assignee · Opened Aug 22, 2024
Mechanism for collecting feedback Open

likely solved

Difficulty 5/5 Over a week Newbie friendliness 35/100

pepkit/pephub#371 · 4 comments · Opened Aug 14, 2024
Improving the views interface Open

enhancement UI/UX

pepkit/pephub#370 · 2 comments · 1 assignee · Opened Aug 14, 2024
History interface should have a 'fork' or tag button Open

priority low UI/UX

Difficulty 3/5 1-2 days Newbie friendliness 42/100

pepkit/pephub#367 · 1 comment · Opened Aug 14, 2024
Can we make the `ph_id` column read only? Open

wontfix

Difficulty 3/5 1-2 days Newbie friendliness 30/100

pepkit/pephub#364 · 1 comment · Opened Jul 30, 2024
Add docs about schema and validation Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 25/100

pepkit/pephub#363 · Opened Jul 25, 2024
UI checklist for next update Open

likely solved UI/UX

pepkit/pephub#361 · 1 assignee · Opened Jul 25, 2024
PEPhub v0.12.0 sprint Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

pepkit/pephub#325 · Opened Jun 25, 2024
Automate search reindexing Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 28/100

pepkit/pephub#317 · 2 comments · Opened Jun 12, 2024
Automate and streamline GEO archive Open

good first issue

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#316 · 7 comments · Opened Jun 10, 2024
Add a "Generate Report" button to generate a results report. Open

enhancement UI/UX

pepkit/pephub#314 · 6 comments · 1 assignee · Opened Jun 5, 2024
Consolidating tags Open

brainstorming

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#310 · 6 comments · Opened May 29, 2024
Add docs on config Open

documentation likely solved

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

pepkit/pephub#307 · 3 comments · Opened May 23, 2024
Add docs on how to create/select a schema Open

documentation likely solved

Difficulty 3/5 1-2 days Newbie friendliness 35/100

pepkit/pephub#306 · 3 comments · Opened May 23, 2024
Add info/help on POPs Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

pepkit/pephub#305 · 2 comments · Opened May 23, 2024
Annotate response model for all endpoints Open

priority low

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#303 · Opened Mar 27, 2024
Add views info to the docs Open

documentation priority high

pepkit/pephub#300 · 3 comments · 1 assignee · Opened Feb 22, 2024
API compliance suite Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#286 · Opened Jan 30, 2024
Forking Views Open

enhancement priority low

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#281 · Opened Jan 30, 2024
ui subfolder name Open

question

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#266 · 3 comments · Opened Jan 17, 2024
Add functionality to the UI that adds and deletes subsample tables Open

bug enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#261 · Opened Jan 13, 2024
Display "XXX results found" on the search page Open

good first issue priority low

Difficulty 5/5 Over a week Newbie friendliness 30/100

pepkit/pephub#250 · Opened Dec 19, 2023
POPs can have dangling pointers Open

bug wontfix

Difficulty 5/5 Over a week Newbie friendliness 25/100

pepkit/pephub#248 · Opened Dec 18, 2023
Showcasing geofetch sra_convert via pephub Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

pepkit/pephub#238 · Opened Dec 5, 2023
Add open graph `<meta />` tags to `<head>` for social sharing Open

client-side good first issue priority low

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

pepkit/pephub#226 · 1 comment · Opened Aug 31, 2023
Add sort function to pephub Open

good first issue

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pepkit/pephub#221 · 3 comments · Opened Aug 11, 2023

pepkit/pephub

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