obophenotype/ncbitaxon

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Build for NCBITaxon

Stars: 31
Forks: 7
Open beginner issues: 0
Indexed issues: 27

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Jul 11, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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27 open issues indexed

Add a `minimal` module Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

obophenotype/ncbitaxon#144 · Opened Jun 19, 2026
Possibility of adding `DIV`, `hasSTY`, `TUI` and `CUI` properties in the release file (ncbitaxon.owl) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

obophenotype/ncbitaxon#132 · Opened Jul 21, 2025
Request for 'termReplacedBy' annotation for deprecated terms in NCBITaxon Open

obophenotype/ncbitaxon#122 · 6 comments · 1 assignee · Opened Feb 13, 2025
change PURL to resolve to NCBI, not Ontobee Open

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

obophenotype/ncbitaxon#117 · 2 comments · 11 reactions · Opened Aug 21, 2024
Document pattern for materializing most specific taxon constraints for a class Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

obophenotype/ncbitaxon#116 · Opened Aug 14, 2024
Add definition for "strain" Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

obophenotype/ncbitaxon#107 · 6 comments · Opened May 3, 2024
Prefix Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

obophenotype/ncbitaxon#102 · 2 comments · Opened Mar 7, 2024
improve disjoints file Open

obophenotype/ncbitaxon#72 · 6 comments · 1 assignee · Opened Jan 11, 2023
Create subsets for domains (bacteria, archaea, eukaryotes) and a subset for all viruses Open

obophenotype/ncbitaxon#61 · 1 assignee · Opened Jan 12, 2022
Consider a non-isomorphic mappings to NCBI Taxon database Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

obophenotype/ncbitaxon#55 · 1 comment · Opened May 11, 2021
for discussion: create nodes for ancestral species Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

obophenotype/ncbitaxon#53 · 3 comments · Opened Apr 1, 2021
Docs: Inject web page link into header & Document differences to UMLS/BioPortal rendering Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

obophenotype/ncbitaxon#50 · 1 comment · Opened Dec 16, 2020
What are GC_IDs? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

obophenotype/ncbitaxon#47 · 5 comments · Opened Dec 8, 2020
Provide standard place for union taxa Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

obophenotype/ncbitaxon#45 · 7 comments · Opened Nov 23, 2020
Partially obsoleted term NCBITaxon_1170837 clinocardium californiense Open

Difficulty 3/5 1-2 days Newbie friendliness 32/100

obophenotype/ncbitaxon#44 · 2 comments · Opened Sep 4, 2020
Add xrefs and subsets of uniprot reference proteomes to ncbitaxon build Open

obophenotype/ncbitaxon#43 · 1 assignee · Opened Aug 28, 2020
Make NCBI:txid identifiers secondary ids in the ontology? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

obophenotype/ncbitaxon#40 · 6 comments · Opened Jun 1, 2020
Travis Job - should it run or not? Open

obophenotype/ncbitaxon#37 · 2 comments · 1 assignee · Opened Apr 20, 2020
Changing purls to GitHub and Release plan Open

obophenotype/ncbitaxon#36 · 9 comments · 1 assignee · Opened Apr 19, 2020
Enhance Python code for subset extraction Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

obophenotype/ncbitaxon#34 · Opened Apr 9, 2020
Include obsolete taxa Open

enhancement

obophenotype/ncbitaxon#33 · 1 reaction · 1 assignee · Opened Apr 9, 2020
Plan on regular (scripted?) releases? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

obophenotype/ncbitaxon#13 · 18 comments · Opened Jul 27, 2018
Propose changing the label on the NCBI top level term to 'NCBI root' Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

obophenotype/ncbitaxon#10 · 7 comments · Opened Feb 17, 2017
add namespace Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

obophenotype/ncbitaxon#8 · 1 comment · Opened Sep 19, 2016
authority missing from taxa Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

obophenotype/ncbitaxon#6 · 2 comments · Opened Aug 26, 2016
Use both SCHPO (deprecated) and SCHPM (preferred) in the taxon checker Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

obophenotype/ncbitaxon#4 · 3 comments · Opened Oct 25, 2015
red tile fish (ncbi taxon:270562) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

obophenotype/ncbitaxon#3 · 6 comments · Opened Oct 21, 2015

obophenotype/ncbitaxon

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