obophenotype / obophenotype/ncbitaxon
authority missing from taxa
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 31
- Forks
- 7
- PR merge metrics
- No merged PRs in 30d
Description
From @MariaALaporte
Seems to be failing when there is >1 authority per taxon?
Examples
http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=16&lvl=3&lin=f&keep=1&srchmode=1&unlock -> Worked, the authority is present in the ncbitaxon.owl file
http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=36746&lvl=3&p=mapview&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock -> Didn’t work, the authorities are not in the ncbitaxon.owl file
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Compare the NCBI Taxonomy entries for IDs 16 and 36746, then inspect the corresponding entries in ncbitaxon.owl. Trace how authority data is transferred into the OWL file, focusing on taxa with more than one authority. Done means the authorities for the failing example are present in ncbitaxon.owl without regressing the working example.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100