obophenotype / obophenotype/ncbitaxon
Add a `minimal` module
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- Dominant language
- Python
- Stars
- 31
- Forks
- 7
- PR merge metrics
- No merged PRs in 30d
Description
See:
It would be useful to have a version of NCBITaxon with only label and is_a axioms (ncbitaxon contains no existential restrictions). This would cut down on the size.
Use cases include
- linkml dynamic valueset checking
- basic propagation scenarios
- some forms of OWL consistency checking (note that for GO/UBERON/CL TC checks more complex axioms are required due to limitations of OWL)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked issues #1352 and #121, then inspect how the repository builds NCBITaxon modules. Done means providing a smaller NCBITaxon version containing only label and is_a axioms, suitable for the listed valueset, propagation, and limited OWL consistency-checking use cases.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100