nipy/nitransforms

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a standalone fork of nipy/nibabel#656

Stars: 35
Forks: 18
Open beginner issues: 0
Indexed issues: 27
Avg merge: 21h 48m
Merged PRs (30d): 1

Dominant language: Python
License: MIT
Last GitHub push: Sep 15, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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27 open issues indexed

ITK Euler3D rotation matrix not supported Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nipy/nitransforms#295 · 3 comments · Opened Feb 23, 2026
ENH: Upstream ResampleSeries resampling engine from fMRIPrep Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

nipy/nitransforms#294 · Opened Feb 15, 2026
ENH: Upstream load_transforms utility from fMRIPrep Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

nipy/nitransforms#293 · Opened Feb 15, 2026
Repeated DenseFieldTransform.map calls are unnecessarily slow Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nipy/nitransforms#288 · 1 comment · Opened Nov 23, 2025
Missing resampling use case in tests Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

nipy/nitransforms#281 · Opened Aug 15, 2025
Framewise displacement calculations, CLI, and perhaps, plotting module Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

nipy/nitransforms#239 · Opened Jul 16, 2025
Mark tests as slow to enable separate running Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

nipy/nitransforms#229 · Opened Nov 17, 2024
Write out ITK's h5 transforms Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nipy/nitransforms#200 · 3 comments · Opened May 15, 2024
Migrate to the new pointset representation Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

nipy/nitransforms#190 · Opened Jan 3, 2024
Notes on incorporating voxel shift maps and per-volume transforms Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#184 · Opened Oct 11, 2023
Incorrect dimension order with HDF5 warp field transforms Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nipy/nitransforms#171 · Opened Dec 14, 2022
Ensure composition should be implemented with ``__matmul__`` and not ``__rmatmul__`` Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#169 · Opened Jul 20, 2022
Double-check ITK's `.h5` composites Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nipy/nitransforms#167 · 1 comment · Opened Jul 19, 2022
Reading/writing AFNI displacement fields with oblique moving/reference Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#157 · Opened Feb 25, 2022
Multi-level B-Spline displacements fields Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#156 · Opened Feb 23, 2022
Current FreeSurfer LTA implementation conflates head-motion series with transform array Open

Difficulty 3/5 1-2 days Newbie friendliness 50/100

nipy/nitransforms#147 · Opened Feb 16, 2022
Problem applying h5-files from fmriprep outputs for reproduction of normalization Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nipy/nitransforms#137 · 7 comments · Opened Dec 7, 2021
Integration into NiBabel Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

nipy/nitransforms#110 · Opened Jun 18, 2021
Resampling of mixed volume+surface data Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

nipy/nitransforms#108 · Opened Jun 16, 2021
Slice-timing correction representation Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#105 · 5 comments · Opened May 15, 2021
Open Microscopy Environment considering a generic nonlinear transform format Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

nipy/nitransforms#101 · 1 reaction · Opened Feb 28, 2021
Transforming streamlines Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#94 · 2 comments · 1 reaction · Opened May 19, 2020
Extend the method to "collapse" transforms in a ``TransformChain`` to the nonlinear case Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

nipy/nitransforms#89 · Opened Mar 27, 2020
Mappings of nonlinear transforms Open

nipy/nitransforms#76 · 1 assignee · Opened Mar 20, 2020
Support for nonparametric transforms of surfaces Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 15/100

nipy/nitransforms#57 · Opened Jan 22, 2020
Support for inversion of nonlinear, nonparametric transforms Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 15/100

nipy/nitransforms#56 · Opened Jan 22, 2020
Support for FreeSurfer tkregister-style register.dat Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

nipy/nitransforms#53 · 4 comments · Opened Dec 2, 2019

nipy/nitransforms

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