nf-core/pairgenomealign
View on GitHubPairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
- Stars
- 12
- Forks
- 5
- Open beginner issues
- 0
- Indexed issues
- 13
- Avg merge
- 1d 10h
- Merged PRs (30d)
- 6
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Aug 26, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
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bug
Difficulty 1/5 Under an hour Newbie friendliness 88/100
nf-core/pairgenomealign#155 ·
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bug
Difficulty 3/5 1-2 days Newbie friendliness 35/100
nf-core/pairgenomealign#153 ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 58/100
nf-core/pairgenomealign#152 ·
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enhancement
Difficulty 2/5 1-3 hours Newbie friendliness 58/100
nf-core/pairgenomealign#146 ·
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`--targetName` mode Openenhancement
Difficulty 3/5 1-2 days Newbie friendliness 55/100
nf-core/pairgenomealign#137 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 30/100
nf-core/pairgenomealign#132 ·
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Read alignment mode Openenhancement
Difficulty 4/5 3-5 days Newbie friendliness 45/100
nf-core/pairgenomealign#131 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 35/100
nf-core/pairgenomealign#125 ·
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PAF export Openenhancement
nf-core/pairgenomealign#123 · 1 comment · 1 assignee ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 30/100
nf-core/pairgenomealign#103 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 45/100
nf-core/pairgenomealign#85 · 1 comment ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 45/100
nf-core/pairgenomealign#67 ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
nf-core/pairgenomealign#33 ·