nf-core / nf-core/pairgenomealign

Transform `modules/local/multiqc_assemblyscan_plot_data` into an assemblyscan MultiQC module

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enhancement
Dominant language
Nextflow
Stars
12
Forks
5
Avg merge
1d 10h
Merged PRs (30d)
6

Description

Description of feature

See https://docs.seqera.io/multiqc/development/modules on how to write new modules.

Alternatively, remplace assemblyscan with an equivalent that has a MultiQC module…

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with modules/local/multiqc_assemblyscan_plot_data and the linked MultiQC module-development documentation. Determine how assemblyscan is currently represented there and what equivalent MultiQC module behavior is expected; done means the assemblyscan results are handled by a working MultiQC module.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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