AWS full test workflow revision handling differs from nf-core standard

Description

The AWS test workflow in this repository uses different revision handling compared to the standard nf-core pattern, which may cause issues with S3 bucket path conflicts or unexpected behavior.

Current State (pairgenomealign)

revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/pairgenomealign/work-${{ github.sha }}
parameters: |
  {
    "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/pairgenomealign/results-test-${{ github.sha }}"
  }

Expected State (nf-core standard from rnaseq)

steps:
  - name: Set revision variable
    id: revision
    run: |
      echo "revision=${{ (github.event_name == 'workflow_dispatch' || github.event_name == 'release') && github.sha || 'dev' }}" >> "$GITHUB_OUTPUT"

  - name: Launch workflow via Seqera Platform
    with:
      revision: ${{ steps.revision.outputs.revision }}
      workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/pairgenomealign/work-${{ steps.revision.outputs.revision }}
      parameters: |
        {
          "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/pairgenomealign/results-${{ steps.revision.outputs.revision }}"
        }

Impact

The current hardcoded github.sha approach:

1. Doesn't follow the nf-core standard pattern used by other pipelines
2. May cause S3 path conflicts when the same SHA is used across different trigger events
3. Doesn't use the conventional 'dev' revision for non-release builds

Reference

Standard pattern implemented in: https://github.com/nf-core/rnaseq/blob/master/.github/workflows/awsfulltest.yml

Action Required

Update the workflow to use dynamic revision handling that sets revision to 'dev' for regular runs and github.sha only for workflow_dispatch and release events.

Start by comparing the repository's AWS full test workflow with the referenced nf-core/rnaseq .github/workflows/awsfulltest.yml pattern. Update revision handling so regular runs use "dev" while workflow_dispatch and release use github.sha, and ensure the workdir and outdir paths use the selected revision.