nf-core/magmap
View on GitHubBest-practice analysis pipeline for mapping reads to a (large) collections of genomes
- Stars
- 12
- Forks
- 6
- Open beginner issues
- 0
- Indexed issues
- 11
- Avg merge
- 1d 7h
- Merged PRs (30d)
- 8
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Aug 11, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
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documentation
Difficulty 1/5 Under an hour Newbie friendliness 92/100
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Difficulty 5/5 Over a week Newbie friendliness 30/100
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Add a eukaryotic gene caller (TransDecoder/MetaEuk) for transcriptomes/genomes lacking annotation Open
Difficulty 5/5 Over a week Newbie friendliness 48/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 42/100
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Difficulty 3/5 1-2 days Newbie friendliness 72/100
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bug
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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Add "instrain"? Openenhancement
Difficulty 5/5 Over a week Newbie friendliness 35/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 25/100
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enhancement
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 15/100