Allow user to avoid some steps in the pipeline when having a concatenated file ready
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@danilodileo is already working on this.
Since Oct 16, 2024.
enhancement
- Dominant language
- Nextflow
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Description
Description of feature
I will be good to have some parameters in magmap that allows the user to skip processes like SOURMASH when he/she already has a concatenated file of genomes.
e.g. --concatenated_genomes_input that will skip all the upstream modules
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