Add eggnog-mapper and KOfamscan
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 12
- Forks
- 6
- Avg merge
- 1d 7h
- Merged PRs (30d)
- 8
Description
Description of feature
As we do in nf-core/metatdenovo it would be great to add functional annotations for all genomes.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by comparing the existing nf-core/magmap workflow with nf-core/metatdenovo to identify where functional annotation is handled. Investigate how eggnog-mapper and KOfamscan would fit into annotation for all genomes; done means both tools are integrated into the pipeline with their outputs available.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100