neurostuff/autonima

Stars: 4
Forks: 1
Open beginner issues: 0
Indexed issues: 32
Avg merge: 12h 56m
Merged PRs (30d): 2

Dominant language: Python
License: No license data
Last GitHub push: Sep 9, 2026
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

32 open issues indexed

this branch of pubget should be used in order to keep access to demographic tables/other important information in the extracted text. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

neurostuff/autonima#74 · Opened Sep 16, 2026
ASRreview inspiration Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#71 · Opened Sep 8, 2026
Abstract screening: output is 88% of the stage's cost, and it is all written justification Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

neurostuff/autonima#69 · Opened Sep 4, 2026
Prompts put varying content before invariant content, so prefix caching almost never hits (1.7% on full-text screening) Open

Difficulty 2/5 1-3 hours Newbie friendliness 75/100

neurostuff/autonima#68 · Opened Sep 4, 2026
Screening and annotation send the bibliography to the model: ~35% of input is never used Open

Difficulty 3/5 1-2 days Newbie friendliness 74/100

neurostuff/autonima#67 · Opened Sep 4, 2026
One failing full_text_source silently discards all the others (99% corpus loss from a missing optional dependency) Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#66 · Opened Sep 3, 2026
Unresolvable table_id aborts the whole run instead of degrading one analysis's metadata Open

Difficulty 3/5 1-2 days Newbie friendliness 75/100

neurostuff/autonima#65 · Opened Sep 3, 2026
No record of what changed between config versions: derive a semantic version diff in the UI Open

Difficulty 5/5 Over a week Newbie friendliness 42/100

neurostuff/autonima#64 · Opened Sep 3, 2026
synthscholar Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#63 · Opened Sep 2, 2026
Sparse analysis names: 2.6% of analyses are unnamed AND 74% of those have no description, so annotation has nothing to judge from Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

neurostuff/autonima#61 · Opened Aug 30, 2026
Duplicate coordinate tables reach the meta-analysis: ~30% of papers carry re-ingested tables, silently double-weighting studies Open

Difficulty 5/5 Over a week Newbie friendliness 28/100

neurostuff/autonima#60 · Opened Aug 30, 2026
annotation metadata_fields has two different defaults depending on construction path (study_fulltext included or not) Open

Difficulty 2/5 1-3 hours Newbie friendliness 75/100

neurostuff/autonima#59 · Opened Aug 27, 2026
Unknown config keys are silently dropped in annotation/screening/retrieval and at top level (but rejected in search/output) Open

Difficulty 4/5 3-5 days Newbie friendliness 65/100

neurostuff/autonima#58 · Opened Aug 27, 2026
search: query and pmids_file are silently unioned, but the docstring says query is ignored Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#57 · 1 comment · Opened Aug 27, 2026
PubMed abstracts truncated to first section; titles cut at inline markup; MeSH never collected Open

Difficulty 4/5 3-5 days Newbie friendliness 72/100

neurostuff/autonima#56 · Opened Aug 26, 2026
Add a machine-readable provenance field to configs (what changed, who changed it, informed by what) Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

neurostuff/autonima#55 · Opened Aug 26, 2026
No token/cost accounting: per-stage API cost cannot be reconstructed from run outputs Open

Difficulty 4/5 3-5 days Newbie friendliness 50/100

neurostuff/autonima#54 · Opened Aug 26, 2026
PubMed search silently truncates at 10,000 results; max_results above that is ignored Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#53 · Opened Aug 26, 2026
Idea: Enable local models Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#52 · Opened Aug 25, 2026
UI Ideas Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#48 · Opened May 20, 2026
IDEA: Auto-extract concepts, definitions, tasks for discovery Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

neurostuff/autonima#46 · Opened May 7, 2026
Compare neurostore-text-extractor with autonima Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

neurostuff/autonima#45 · Opened Apr 27, 2026
Prevent stripping of figures and tables during full text screening Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

neurostuff/autonima#44 · 1 comment · Opened Apr 16, 2026
IDEA: Stricter screening * "unsure" categorization Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/autonima#40 · Opened Feb 17, 2026
Determine why apples-to-apples annotation in social meta-analysis is still not great Open

evaluation

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#39 · Opened Feb 16, 2026
Add grounding of inclusion/exclusion reasons Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#38 · Opened Jan 29, 2026
Add reporting and researcher-in-the-loop evaluation tools Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#37 · 1 comment · Opened Jan 29, 2026
Add supplemental PDFs as extraction input Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

neurostuff/autonima#36 · Opened Jan 29, 2026
Implement Flex Pricing Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

neurostuff/autonima#35 · Opened Jan 29, 2026
Ingest analyses from ACE & ns-pond Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/autonima#27 · Opened Sep 30, 2025
bug: Search cache adds results that are not in new result Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

neurostuff/autonima#16 · Opened Sep 5, 2025
Generate PRISMA Chart Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/autonima#11 · Opened Sep 4, 2025

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