Owner

neurostuff

8 indexed repositories · View on GitHub

NiMARE
Coordinate- and image-based meta-analysis in Python

Python · 212 stars
PyMARE
PyMARE: Python Meta-Analysis & Regression Engine

Python · 58 stars
neurostore
The NeuroStore/Neurosynth application

TypeScript · 13 stars
autonima

Python · 4 stars
compose-docs
Neurosynth-Compose Documentaiton

Python · 0 stars
compose-runner
package for running neurosynth-compose generated bundles locally and in the cloud

Python · 0 stars
study_schema
schema representation for extracting structured information from neuroimaging articles

0 stars
neurostuff-sdk-generator
generate sdks for neurostore/neurosynth-compose

Shell · 0 stars

Beginner friendly Everything

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IBMA extraction phase, analyses in different orders Open

bug frontend

Difficulty 3/5 1-2 days Newbie friendliness 65/100

neurostuff/neurostore#1766 · Opened Sep 17, 2026
this branch of pubget should be used in order to keep access to demographic tables/other important information in the extracted text. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

neurostuff/autonima#74 · Opened Sep 16, 2026
make selecting data and apps more obvious in the process editor Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/neurostore#1764 · Opened Sep 16, 2026
change research to publications Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurostuff/neurostore#1758 · Opened Sep 14, 2026
ASRreview inspiration Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#71 · Opened Sep 8, 2026
Abstract screening: output is 88% of the stage's cost, and it is all written justification Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

neurostuff/autonima#69 · Opened Sep 4, 2026
Prompts put varying content before invariant content, so prefix caching almost never hits (1.7% on full-text screening) Open

Difficulty 2/5 1-3 hours Newbie friendliness 75/100

neurostuff/autonima#68 · Opened Sep 4, 2026
Screening and annotation send the bibliography to the model: ~35% of input is never used Open

Difficulty 3/5 1-2 days Newbie friendliness 74/100

neurostuff/autonima#67 · Opened Sep 4, 2026
One failing full_text_source silently discards all the others (99% corpus loss from a missing optional dependency) Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#66 · Opened Sep 3, 2026
Unresolvable table_id aborts the whole run instead of degrading one analysis's metadata Open

Difficulty 3/5 1-2 days Newbie friendliness 75/100

neurostuff/autonima#65 · Opened Sep 3, 2026
No record of what changed between config versions: derive a semantic version diff in the UI Open

Difficulty 5/5 Over a week Newbie friendliness 42/100

neurostuff/autonima#64 · Opened Sep 3, 2026
Bug: Jackknife diagnostic raises non-finite distance matrix error during subtraction meta-analysis report generation Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 55/100

neurostuff/NiMARE#1130 · Opened Sep 3, 2026
on demand paper upload/parsing Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/neurostore#1732 · 2 comments · Opened Sep 2, 2026
synthscholar Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#63 · Opened Sep 2, 2026
Sparse analysis names: 2.6% of analyses are unnamed AND 74% of those have no description, so annotation has nothing to judge from Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

neurostuff/autonima#61 · Opened Aug 30, 2026
Duplicate coordinate tables reach the meta-analysis: ~30% of papers carry re-ingested tables, silently double-weighting studies Open

Difficulty 5/5 Over a week Newbie friendliness 28/100

neurostuff/autonima#60 · Opened Aug 30, 2026
Create workflow for image upload to neurovault and link back to neurostore Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/neurostore#1723 · Opened Aug 29, 2026
annotation metadata_fields has two different defaults depending on construction path (study_fulltext included or not) Open

Difficulty 2/5 1-3 hours Newbie friendliness 75/100

neurostuff/autonima#59 · Opened Aug 27, 2026
Unknown config keys are silently dropped in annotation/screening/retrieval and at top level (but rejected in search/output) Open

Difficulty 4/5 3-5 days Newbie friendliness 65/100

neurostuff/autonima#58 · Opened Aug 27, 2026
search: query and pmids_file are silently unioned, but the docstring says query is ignored Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#57 · 1 comment · Opened Aug 27, 2026
PubMed abstracts truncated to first section; titles cut at inline markup; MeSH never collected Open

Difficulty 4/5 3-5 days Newbie friendliness 72/100

neurostuff/autonima#56 · Opened Aug 26, 2026
Add a machine-readable provenance field to configs (what changed, who changed it, informed by what) Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

neurostuff/autonima#55 · Opened Aug 26, 2026
No token/cost accounting: per-stage API cost cannot be reconstructed from run outputs Open

Difficulty 4/5 3-5 days Newbie friendliness 50/100

neurostuff/autonima#54 · Opened Aug 26, 2026
PubMed search silently truncates at 10,000 results; max_results above that is ignored Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurostuff/autonima#53 · Opened Aug 26, 2026
Idea: Enable local models Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#52 · Opened Aug 25, 2026
Don't ingest/remove subject level images from neurovault ingestion Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurostuff/neurostore#1718 · Opened Aug 24, 2026
show negatives by default in the IBMA meta-analysis result page Open

frontend

neurostuff/neurostore#1711 · 1 assignee · Opened Aug 23, 2026
summary of inclusion for IBMA lists coordinates instead of images Open

frontend

Difficulty 3/5 1-2 days Newbie friendliness 52/100

neurostuff/neurostore#1710 · Opened Aug 23, 2026
ordering of selecting maps output from IBMA Open

frontend

Difficulty 3/5 1-2 days Newbie friendliness 45/100

neurostuff/neurostore#1703 · 2 comments · Opened Aug 22, 2026
natural log and log base 10 both used in repo, sometimes you cannot tell which is which by name. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1101 · Opened Aug 20, 2026
IBMA extraction validate studies for supported algorithms Open

blocked frontend low-priority

Difficulty 4/5 3-5 days Newbie friendliness 48/100

neurostuff/neurostore#1700 · 2 comments · Opened Aug 20, 2026
inefficient g, g_var transform Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1093 · Opened Aug 20, 2026
make value_type and space editable Open

frontend

Difficulty 3/5 1-2 days Newbie friendliness 64/100

neurostuff/neurostore#1697 · Opened Aug 19, 2026
optionally update has_images/has_coordinates attributes. Open

low-priority

Difficulty 4/5 3-5 days Newbie friendliness 45/100

neurostuff/neurostore#1687 · Opened Aug 13, 2026
explore page Open

blocked frontend

neurostuff/neurostore#1684 · 1 assignee · Opened Aug 10, 2026
chore(dev) bump mui to v9 Open

enhancement frontend

Difficulty 4/5 3-5 days Newbie friendliness 48/100

neurostuff/neurostore#1659 · Opened Jul 30, 2026
remove unused code in importfinalize and fix sleuth type issues Open

frontend low-priority

neurostuff/neurostore#1644 · 1 assignee · Opened Jul 24, 2026
improve state updates for Project store in curation phase Open

frontend medium-impact

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/neurostore#1643 · Opened Jul 24, 2026
Add `study_type` closed facet at Study level (primary vs secondary literature)* Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

neurostuff/study_schema#2 · 2 comments · Opened Jul 20, 2026
UI Ideas Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/autonima#48 · Opened May 20, 2026
ML interface in NiMARE Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1082 · Opened May 20, 2026
display more informative errors from the frontend (and guide users on how to report said error(s) Open

bug frontend

Difficulty 3/5 1-2 days Newbie friendliness 52/100

neurostuff/neurostore#1568 · Opened May 15, 2026
Error when entering extraction page for the first time Open

bug frontend

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/neurostore#1567 · Opened May 15, 2026
add FAQ about downloading working directly with studyset/annotation in NiMARE Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

neurostuff/compose-docs#39 · Opened May 12, 2026
export (& import) functions for extracted coordinates Open

question

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/neurostore#1557 · 2 comments · Opened May 12, 2026
Use related meta-analyses to define a prior mask to inform your current meta-analysis Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#1077 · Opened May 11, 2026
IDEA: Auto-extract concepts, definitions, tasks for discovery Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

neurostuff/autonima#46 · Opened May 7, 2026
view_search function should be abstract/not implemented unless necessary. Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

neurostuff/neurostore#1538 · Opened May 6, 2026
support lesion mapping/lesion synthesis more natively Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 32/100

neurostuff/NiMARE#1074 · Opened May 5, 2026
add easy studyset/annotation retrieval utility Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 52/100

neurostuff/NiMARE#1073 · Opened May 5, 2026

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