neurostuff/NiMARE

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Coordinate- and image-based meta-analysis in Python

Stars: 213
Forks: 74
Open beginner issues: 0
Indexed issues: 84
Avg merge: 1d 1h
Merged PRs (30d): 37

Dominant language: Python
License: MIT
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: help wanted

Beginner friendly Everything

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84 open issues indexed

Bug: Jackknife diagnostic raises non-finite distance matrix error during subtraction meta-analysis report generation Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 55/100

neurostuff/NiMARE#1130 · Opened Sep 3, 2026
natural log and log base 10 both used in repo, sometimes you cannot tell which is which by name. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1101 · Opened Aug 20, 2026
inefficient g, g_var transform Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1093 · Opened Aug 20, 2026
ML interface in NiMARE Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#1082 · Opened May 20, 2026
Use related meta-analyses to define a prior mask to inform your current meta-analysis Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#1077 · Opened May 11, 2026
support lesion mapping/lesion synthesis more natively Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 32/100

neurostuff/NiMARE#1074 · Opened May 5, 2026
add easy studyset/annotation retrieval utility Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 52/100

neurostuff/NiMARE#1073 · Opened May 5, 2026
support Tract based spatial statistics Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

neurostuff/NiMARE#1010 · Opened Apr 29, 2026
Duplicate and inconsistent implementations of get_analyses_by_coordinate in Studyset Open

Difficulty 3/5 1-2 days Newbie friendliness 58/100

neurostuff/NiMARE#1001 · 2 comments · Opened Apr 2, 2026
Create a blog/post about performance gains Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

neurostuff/NiMARE#1000 · 5 comments · Opened Apr 2, 2026
Compare NiMARE with other meta-analysis software Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/NiMARE#998 · 1 comment · Opened Apr 1, 2026
align generation of modeled activation maps with sklearn Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#997 · Opened Mar 31, 2026
[Discussion] Diagnostic tests exploring discretization, boundary effects, and null approximation in ALE Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#993 · Opened Mar 30, 2026
BACON Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 15/100

neurostuff/NiMARE#968 · Opened Jan 31, 2026
[FEATURE] Expanded metadata Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

neurostuff/NiMARE#966 · 1 comment · Opened Jan 22, 2026
Author-Topic Model Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#963 · Opened Jan 6, 2026
ENIGMA IBMMA (Image Based Meta & Mega Analyses) Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#957 · Opened Dec 18, 2025
GPU accelerated NiMARE Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/NiMARE#953 · 3 comments · Opened Dec 18, 2025
Cerebellar ALE Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#952 · Opened Dec 18, 2025
Missing robustness analysis code and plots in two-sample ALE example documentation Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurostuff/NiMARE#927 · 2 comments · Opened Jun 2, 2025
Improve documentation on why the "generic" (non-Monte Carlo) MCC methods are suboptimal Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 74/100

neurostuff/NiMARE#912 · 1 comment · 2 reactions · Opened Feb 19, 2025
Optimize ImagesToCoordinates with `Parallel` Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

neurostuff/NiMARE#871 · Opened Feb 1, 2024
[DOCS] Update correlation decoder section & add live running example Open

documentation enhancement

neurostuff/NiMARE#869 · 5 comments · 1 assignee · Opened Jan 22, 2024
beta maps in the workflow report Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

neurostuff/NiMARE#867 · Opened Jan 19, 2024
Implement early-stopping rule for Monte Carlo FWE Correction Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

neurostuff/NiMARE#866 · Opened Jan 18, 2024
Refactor or replace `macm_workflow` with `MACMWorkflow` class Open

deprecation enhancement question refactoring workflows

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#850 · Opened Dec 11, 2023
nidm to nimare dataset Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

neurostuff/NiMARE#837 · 4 comments · Opened Sep 18, 2023
Implement caching for nimare.io.convert_neurosynth_to_dataset Open

enhancement

neurostuff/NiMARE#826 · 2 comments · 1 assignee · Opened Aug 21, 2023
Recruiting GPU not possible (coordinate-based meta-analysis) Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurostuff/NiMARE#819 · 1 comment · Opened Jul 20, 2023
Example notebook Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 30/100

neurostuff/NiMARE#818 · 1 comment · Opened Jul 20, 2023
Include as a part of the boilerplate what transformation(s) if any was applied to coordinates Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

neurostuff/NiMARE#816 · Opened Jun 21, 2023
add jupyterlite links to the examples gallery Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

neurostuff/NiMARE#784 · Opened Apr 11, 2023
Append copyright waiver to boilerplate text Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurostuff/NiMARE#767 · Opened Feb 2, 2023
Add conversion function for MKDA-format datasets Open

cbma enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#739 · 1 comment · Opened Aug 6, 2022
Create Mixin for Estimators that generate tables Open

cbma ibma refactoring

Difficulty 4/5 3-5 days Newbie friendliness 30/100

neurostuff/NiMARE#737 · Opened Jul 29, 2022
Implement fail-safe publication bias method Open

cbma diagnostics enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#730 · 1 comment · Opened Jul 22, 2022
Better documentation on how to create an image based meta-analysis dataset from scratch Open

documentation ibma

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurostuff/NiMARE#723 · 1 comment · Opened Jun 18, 2022
Possible improvements for the user guide Open

documentation enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#719 · 1 comment · Opened Jun 16, 2022
Add venv installation instructions Open

documentation enhancement

Difficulty 1/5 1-3 hours Newbie friendliness 68/100

neurostuff/NiMARE#716 · 1 reaction · Opened Jun 16, 2022
Support image-based meta-regression Open

annotate effort: medium enhancement ibma impact: medium priority: medium

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#705 · 1 comment · Opened Jun 13, 2022
Add documentation section on contributing new methods Open

community documentation opinions wanted

Difficulty 5/5 Over a week Newbie friendliness 35/100

neurostuff/NiMARE#698 · 2 comments · Opened Jun 4, 2022
Create documentation for teaching users Open

documentation opinions wanted

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#697 · 1 comment · Opened Jun 3, 2022
Link to existing educational materials somewhere in the docs Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

neurostuff/NiMARE#696 · Opened Jun 2, 2022
Define parameters in a central location and reference those definitions in docstrings Open

documentation effort: medium impact: low priority: low

neurostuff/NiMARE#687 · 1 comment · 1 assignee · Opened May 31, 2022
Versioneer-generated version strings are "dirty" on RTD Open

bug documentation impact: low priority: low

Difficulty 4/5 3-5 days Newbie friendliness 30/100

neurostuff/NiMARE#683 · 1 comment · Opened May 27, 2022
RF Suggestion: Instance methods vs helper functions Open

enhancement refactoring

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#671 · 1 comment · 1 reaction · Opened Apr 22, 2022
Create DatasetSearcher class for transforming Datasets Open

breaking-change enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#669 · 1 comment · Opened Apr 22, 2022
Consider splitting some modules off into namespace packages Open

breaking-change maintenance opinions wanted

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#668 · Opened Apr 22, 2022
Should the maximum statistic null distributions be separated by sign for two-sided tests? Open

cbma help wanted question

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#663 · 2 comments · Opened Apr 20, 2022
Align file naming convention more with fitlins/BIDS Open

breaking-change enhancement neurostore neurovault opinions wanted

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurostuff/NiMARE#624 · 1 comment · Opened Dec 16, 2021

neurostuff/NiMARE

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