matplotlib / matplotlib/napari-matplotlib
Measure along / within ROIs
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 46
- Forks
- 24
- PR merge metrics
- No merged PRs in 30d
Description
Not sure if this is within the scope of the project, but it would be nice to be able to measure along ROIs (e.g. a "profile line" through that moves through space in one (more, eventually?) axis. Through lines, it could be a profile line. With polygons, it could be average intensity (or any other function that takes a set of pixels and returns a number), or a profile line along the circumference of the shape.
Something like this as an example of the profile line:
I worked on something like this a couple of years ago, and might give it a shot when I have the time, but I thought I'd leave this here so I could remember, and if it inspired anyone else to give it a shot since I think it'd be very useful!
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named in the issue. Start by reviewing the repository's existing ROI and plotting entry points, then clarify whether line profiles, polygon aggregation, and circumference profiles are in scope. Done should mean the supported ROI measurements and their expected behavior are explicitly defined.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- matplotlib, python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100