Owner
jni
26 indexed repositories · View on GitHub
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skan
Python module to analyse skeleton (thin object) images
Python · 149 stars
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ray
Automatic segmentation of electron microscopy volumes
Python · 30 stars
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llc-tools
Decorators to make it easier to write SciPy LowLevelCallables
Python · 23 stars
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affinder
Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
Python · 23 stars
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zarpaint
Paint segmentations directly to on-disk/remote zarr arrays
Python · 16 stars
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git-tutorial
Notes for a workshop on using git and github
CSS · 10 stars
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using-python-for-science
The essential guide to using Python for scientists
TeX · 9 stars
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mysquishy
Recompress zarr chunks in-place
Python · 9 stars
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lma-2021-bioimage-analysis-python
"Bioimage analysis in Python" workshop at LMA2021
Jupyter Notebook · 8 stars
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viridis
A tree library for Python
Python · 6 stars
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mpl-volume-viewer
Simple matplotlib-based volume (3D image) viewer
Jupyter Notebook · 6 stars
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i2k-skimage-napari
Repository for the scikit-image, napari, & friends tutorial at I2K 2020
Jupyter Notebook · 5 stars
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napari-midi
Control napari with a USB midi controller
Python · 4 stars
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pia-tracking
Scripts to work with Pia Larsson's platelet tracking data
Python · 4 stars
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Python · 4 stars
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cellom2tif
Python command line interface to convert Cellomics .C01 files to TIFF.
Python · 2 stars
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explode-view
Show exploded view of an image.
Python · 2 stars
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synapse-geometry
Examine features of synapse geometry in EM segmentation data
Python · 1 star
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skan-scripts
Some scripts and data for skeleton analysis with Python
Python · 1 star
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scientific-programming-in-Python
How to use Python for scientific work
TeX · 1 star
- 6 more repositories live on View on GitHub
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jni/synapse-geometry#1 · 0 comments · 0 reactions · 0 assignees ·
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jni/skan-scripts#1 · 0 comments · 0 reactions · 0 assignees ·
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jni/skan-scripts#2 · 0 comments · 0 reactions · 0 assignees ·
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jni/parallel-python-aspp-apac#1 · 1 comment · 0 reactions · 0 assignees ·
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jni/cellom2tif#3 · 0 comments · 0 reactions · 0 assignees ·
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jni/git-tutorial#4 · 0 comments · 0 reactions · 0 assignees ·
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Suggestions Open
jni/git-tutorial#6 · 1 comment · 0 reactions · 0 assignees ·
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Licensing Open
jni/git-tutorial#10 · 1 comment · 0 reactions · 0 assignees ·
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jni/scientific-programming-in-Python#1 · 0 comments · 0 reactions · 0 assignees ·
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jni/scientific-programming-in-Python#2 · 0 comments · 0 reactions · 0 assignees ·
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documentation good first issue
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documentation good first issue
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Improve our testing Opengood first issue testing
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jni/mpl-volume-viewer#2 · 0 comments · 0 reactions · 0 assignees ·
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slice_view Open
jni/mpl-volume-viewer#3 · 0 comments · 1 reaction · 0 assignees ·
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change axis of view Open
jni/mpl-volume-viewer#5 · 0 comments · 0 reactions · 0 assignees ·
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jni/i2k-skimage-napari#3 · 0 comments · 0 reactions · 0 assignees ·
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jni/lma-2021-bioimage-analysis-python#2 · 1 comment · 0 reactions · 0 assignees ·
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jni/lma-2021-bioimage-analysis-python#20 · 0 comments · 0 reactions · 0 assignees ·
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jni/napari-midi#1 · 1 comment · 1 reaction · 0 assignees ·
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jni/napari-midi#2 · 0 comments · 0 reactions · 0 assignees ·
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jni/napari-midi#3 · 0 comments · 0 reactions · 0 assignees ·
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jni/napari-midi#4 · 0 comments · 0 reactions · 0 assignees ·
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Configuration UI Open
jni/napari-midi#5 · 0 comments · 0 reactions · 0 assignees ·
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jni/pia-tracking#1 · 0 comments · 0 reactions · 0 assignees ·
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jni/pia-tracking#2 · 0 comments · 0 reactions · 0 assignees ·
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