jni/ray

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Automatic segmentation of electron microscopy volumes

Stars: 30
Forks: 9
Open beginner issues: 0
Indexed issues: 19

Dominant language: Python
License: No license data
Last GitHub push: Oct 23, 2012
Latest indexed: Sep 18, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

19 open issues indexed

refine_post_merge_boundaries() could remove double-counted pixels Open

new-feature

jni/ray#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Support backtracking in agglomeration with a tree structure for the history Open

new-feature

jni/ray#8 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
change verbosity using logging module Open

bug

jni/ray#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
refine_post_merge_boundaries may be vectorizable Open

performance

jni/ray#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
networkx.Graph is too heavyweight for our segmentation Open

performance

jni/ray#11 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
specify boundary width Open

new-feature

jni/ray#13 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
test performance of node split Open

data

jni/ray#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Show errors given a body number and matching volume Open

new-feature

jni/ray#25 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
add trainable normalized cut Open

new-feature

jni/ray#26 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Add stochastic merging and consensus merge paths Open

new-feature

jni/ray#27 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Add progress bar to RandomForest Open

new-feature

jni/ray#33 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Enable progressbar for agglo.Rag.learn_agglomerate() Open

bug

jni/ray#34 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
add distutils support Open

new-feature

jni/ray#38 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
copy operation is not atomic Open

bug

jni/ray#41 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Watershed fails when values include inf Open

bug

jni/ray#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Graph input is a label field, not a watershed Open

jni/ray#48 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Provide checks for command-line option consistency Open

jni/ray#49 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Save FeatureManager objects along with classifiers Open

critical new-feature

jni/ray#50 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Rework README example to use some of the test data included with the ray repo Open

jni/ray#53 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 18, 2026

jni/ray

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