jni/zarpaint

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Paint segmentations directly to on-disk/remote zarr arrays

Stars: 16
Forks: 8
Open beginner issues: 0
Indexed issues: 15

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Mar 25, 2026
Latest indexed: Sep 18, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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15 open issues indexed

In addition to writing into the labels image, write to a "proofread" binary mask Open

jni/zarpaint#3 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 18, 2026
Axes ordering widget doesn't update when assigning to dims.order Open

jni/zarpaint#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Keyboard shortcuts and other ergonomic considerations Open

jni/zarpaint#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Add ability to edit tracking data Open

jni/zarpaint#11 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Idea: visualize consecutive slices side by side Open

jni/zarpaint#12 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Make new 3D point click n-dimensional Open

jni/zarpaint#15 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
tensorstore may not be necessary Open

jni/zarpaint#17 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Add docs GitHub Actions Open

jni/zarpaint#28 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
BUG: function correct_labels does not exist in the codebase, console entry point broken Open

jni/zarpaint#31 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Slice interpolation Open

jni/zarpaint#38 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Watershed split deletes label ids instead of reusing them Open

jni/zarpaint#39 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Allow asynchronous behaviour for long running tasks Open

jni/zarpaint#42 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Expose open_tensorstore through zarpaint GUI Open

jni/zarpaint#43 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 18, 2026
3D point finding fails with "Labels object has no attribute _dims_displayed" Open

jni/zarpaint#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
CI config needs updating Open

jni/zarpaint#54 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026

jni/zarpaint

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