intermine / intermine/intermine-ws-python-docs
Tutorial 4 final steps cause an error
- 主要語言
- Jupyter Notebook
- 星號
- 14
- 分支
- 19
- PR 合併指標
- 30 天內沒有已合併 PR
描述
This might actually be an issue with the python package, but I'll leave that up to you to decide and open in the python client repo if needed.
The issue is in the final couple of lines of tutorial 4 - I thought I'd add a printline statement to see the output for these two lines...
```
query.add_path_description("ontologyAnnotations.ontologyTerm","Ontology Term")
query.add_path_description("publications","Pub.")
```
But when I try to print we get a badly formed query error.
You can try it out yourself in [this binder instance](https://mybinder.org/v2/gh/yochannah/intermine-ws-python-docs/tutorial-4?filepath=04-tutorial.ipynb)
Error:
```python
WebserviceError: ('There was a problem with our request', 400, 'Bad Request', u"Query does not pass XML validation. cvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\ncvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\n")
```
貢獻指南
這個儲存庫沒有索引到貢獻指南
研究方向
Open 04-tutorial.ipynb on the tutorial-4 branch and run the final cells in the linked Binder instance. Trace the two add_path_description calls and the resulting XML validation error, then determine whether the fix belongs in the tutorial or the Python client; done when the tutorial no longer produces the reported error.
由索引模型根據 Issue 內容生成。
評估
- 技術堆疊
- jupyter-notebook, python
- 領域
- documentation
- Issue 類型
- 缺陷
- 難度
- 3/5
- 預估耗時
- 1-2 天
- 活躍度
- 停滯
- 描述清晰度
- 基本清楚
- 新手友好度
- 42/100