intermine / intermine/intermine-ws-python-docs

Tutorial 4 final steps cause an error

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Langage dominant
Jupyter Notebook
Étoiles
14
Forks
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Description

This might actually be an issue with the python package, but I'll leave that up to you to decide and open in the python client repo if needed.

The issue is in the final couple of lines of tutorial 4 - I thought I'd add a printline statement to see the output for these two lines...

```
query.add_path_description("ontologyAnnotations.ontologyTerm","Ontology Term")
query.add_path_description("publications","Pub.")
```
But when I try to print we get a badly formed query error.

You can try it out yourself in [this binder instance](https://mybinder.org/v2/gh/yochannah/intermine-ws-python-docs/tutorial-4?filepath=04-tutorial.ipynb)

Error:
```python
WebserviceError: ('There was a problem with our request', 400, 'Bad Request', u"Query does not pass XML validation. cvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\ncvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\n")
```

Guide de contribution

Aucun guide de contribution indexé pour ce dépôt

Piste de recherche

Open 04-tutorial.ipynb on the tutorial-4 branch and run the final cells in the linked Binder instance. Trace the two add_path_description calls and the resulting XML validation error, then determine whether the fix belongs in the tutorial or the Python client; done when the tutorial no longer produces the reported error.

Rédigé par le modèle d'indexation à partir du texte de l'issue.

Évaluation

Stack technique
jupyter-notebook, python
Domaine
documentation
Type d'issue
Bug
Difficulté
3/5
Temps estimé
1-2 jours
Activité
À l'abandon
Clarté
Plutôt claire
Accessibilité débutants
42/100

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