intermine / intermine/intermine-ws-python-docs

Tutorial 4 final steps cause an error

Abierto
#24 2 comentarios 0 reacciones 0 asignados Ver en GitHub
Lenguaje dominante
Jupyter Notebook
Estrellas
14
Forks
19
Métricas de merge de PR
Sin PR fusionados en 30 d

Descripción

This might actually be an issue with the python package, but I'll leave that up to you to decide and open in the python client repo if needed.

The issue is in the final couple of lines of tutorial 4 - I thought I'd add a printline statement to see the output for these two lines...

```
query.add_path_description("ontologyAnnotations.ontologyTerm","Ontology Term")
query.add_path_description("publications","Pub.")
```
But when I try to print we get a badly formed query error.

You can try it out yourself in [this binder instance](https://mybinder.org/v2/gh/yochannah/intermine-ws-python-docs/tutorial-4?filepath=04-tutorial.ipynb)

Error:
```python
WebserviceError: ('There was a problem with our request', 400, 'Bad Request', u"Query does not pass XML validation. cvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\ncvc-complex-type.3.2.2: Attribute 'path' is not allowed to appear in element 'pathDescription'.\ncvc-complex-type.4: Attribute 'pathString' must appear on element 'pathDescription'.\n")
```

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Línea de trabajo

Open 04-tutorial.ipynb on the tutorial-4 branch and run the final cells in the linked Binder instance. Trace the two add_path_description calls and the resulting XML validation error, then determine whether the fix belongs in the tutorial or the Python client; done when the tutorial no longer produces the reported error.

Escrito por el modelo de indexación a partir del texto del issue.

Evaluación

Stack tecnológico
jupyter-notebook, python
Área
documentation
Tipo de issue
Error
Dificultad
3/5
Tiempo estimado
1-2 días
Estado de actividad
Estancado
Claridad
Bastante claro
Aptitud para principiantes
42/100

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