Owner

imicroseq

7 indexed repositories · View on GitHub

portal-ui
Canadian VirusSeq Data Portal

TypeScript · 8 stars
metadata-schemas
Repo to host Virus-seq metadata schemas defined using JSON Schema

JavaScript · 5 stars
singularity
Singularity - All Contributors, All Files

Java · 2 stars
pedigree

TypeScript · 2 stars
muse
Molecular Upload Submission sErvice

Java · 1 star
roadmap
Roadmap and planning for the Virus-Seq portal teams

0 stars
submission-service

TypeScript · 0 stars

Open All

Kafka upgrade Open

imicroseq/roadmap#33 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Create an SOP for schema version upgrade Open

documentation

imicroseq/roadmap#38 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Modify Data Portal - Wastewater Open

Epic

imicroseq/roadmap#44 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Explore Data Page for Wastewater Open

Epic

imicroseq/roadmap#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Facet Filters List Open

imicroseq/roadmap#47 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Download Dataset Open

imicroseq/roadmap#48 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Column visibility Open

imicroseq/roadmap#49 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
WasteWater Integration Open

imicroseq/roadmap#90 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Data Version Control Open

Epic

imicroseq/roadmap#115 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Submitters Must Submit All Files Up Front Open

imicroseq/roadmap#171 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Replace ViralAI With Internal Solution Open

imicroseq/roadmap#173 · 7 comments · 0 reactions · 2 assignees · Indexed Sep 17, 2026
Bug - Environmental Metadata TSV Export Contains Incorrect/Missing Column Names Open

imicroseq/roadmap#174 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Prod Submission Issue Open

imicroseq/roadmap#175 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
User Access Control Open

Epic

imicroseq/roadmap#176 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Submission UI Improvement - File Processing Open

imicroseq/roadmap#177 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Submission UI Improvement Open

imicroseq/roadmap#178 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Submission UI Improvement - Cancel Submission Button Open

imicroseq/roadmap#179 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Song update version Open

imicroseq/roadmap#180 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Many JDBCConnectionExceptions are thrown when muse is under heavy load Open

critical

imicroseq/muse#86 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add get endoints to find uploads by id Open

enhancement

imicroseq/muse#87 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Provide Separate TSV file for Data Release Bundles Open

imicroseq/singularity#41 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Split Data Release Bundle in to multiple gzips Open

imicroseq/singularity#42 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Failed Build Archive releases in Prod Open

imicroseq/singularity#80 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Allow passing TSV columns through environment variables Open

imicroseq/singularity#91 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
performance improvements Open

imicroseq/pedigree#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Replace Redis, which is not closed-source Open

imicroseq/pedigree#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Change metadata schema for sample collection date Open

enhancement

imicroseq/metadata-schemas#17 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Converting ph4ge waste water schema to lectern Open

imicroseq/metadata-schemas#39 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
UI/BE: Send to Data Curation Open

minor on hold

imicroseq/portal-ui#22 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Bug: Email verification link and logging in should just load the dashboard Open

bug minor on hold

imicroseq/portal-ui#43 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Better handling of duplicate sequences Open

bug enhancement WP_1

imicroseq/portal-ui#129 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Change log for releases Open

WP_1

imicroseq/portal-ui#131 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Create UI for to allow users to modify metadata (FR) Open

enhancement minor specs-needed WP_1

imicroseq/portal-ui#150 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Allow filter by vaccination status (FR) Open

awaiting-details enhancement minor

imicroseq/portal-ui#155 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Adding a "news/announcements" section (FR) Open

enhancement minor WP_1

imicroseq/portal-ui#158 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
REST api or similar to acquire data Open

help wanted specs-needed WP_1

imicroseq/portal-ui#160 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
explore adding patient and specimen id Open

awaiting-details minor on hold WP_1

imicroseq/portal-ui#197 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Investigate: Improve Design to Handle Large Downloads Open

critical enhancement specs-needed WP_1

imicroseq/portal-ui#222 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Change to xz compression for downloads Open

enhancement minor WP_1

imicroseq/portal-ui#236 · 3 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Sample Collected date is one day offset earlier/before the user-provided date Open

bug minor

imicroseq/portal-ui#259 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Compress tsv file before download Open

on hold ui/ux

imicroseq/portal-ui#272 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Provide isolated Metadata downloading functionality Open

imicroseq/portal-ui#282 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Download Dataset(fasta) fails intermittently on the Explorer Page Open

bug

imicroseq/portal-ui#287 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Timeline graphs of cases, optionally filtered by lineage. Open

specs-needed

imicroseq/portal-ui#313 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Geographic maps of cases, optionally filtered by lineage. Open

specs-needed

imicroseq/portal-ui#314 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Explaination of scorpio call Open

blocked enhancement

imicroseq/portal-ui#362 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Fix Keycloak logout parameters Open

imicroseq/portal-ui#378 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
make Submission error messages less verbose Open

enhancement minor

imicroseq/portal-ui#397 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Quicksearch by GISAID accession Open

imicroseq/portal-ui#406 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
submission schema validation error Open

imicroseq/portal-ui#412 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026

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