imicroseq / imicroseq/roadmap

WasteWater Integration

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Description

> _This issue was auto-created as part of the Zenhub sub-issues migration. The original entity was opened on 2024-07-11. For more details see [this post](https://changelog.zenhub.com/migration-of-epics-projects-to-sub-issues-313645?zenhub_entity_id=Z2lkOi8vcmFwdG9yL1Byb2plY3QvODM1Nzg)._

Pre
1. have virusseq prod instance running on dev env
-- deploy aria on dev to get muse working
2. after step 1 and 2. start with submission

Submission
1. script - csv to JSON : Ticket - extend existing endpoint to accept csv as input and convert to JSON
2. insert JSON to elastic search
3. identify elastic search mapping
4. Reindex mapping and reupload the JSON
5. Arranger configuration for Mapping
6. Build UI for Arranger

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by clarifying the prerequisite dev environment and the submission workflow described in the issue: CSV conversion, Elasticsearch insertion and mapping, reindexing, Arranger configuration, and UI work. The issue does not name files, tests, entry points, or a defined completion check, so the expected scope and done criteria need to be established first.

Written by the indexing model from the issue text.

Assessment

Tech stack
elasticsearch
Domain
backend, frontend, search
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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