Owner
guyleonard
13 indexed repositories · View on GitHub
-
get_jgi_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Perl · 39 stars
-
orthomcl_tools
A couple of tools I find indispensable for post orthomcl down-stream analysis.
Perl · 11 stars
-
sagawe
:white_circle: :arrow_right: :mag: :information_source: A suggested workflow, and accompanying scripts, to assemble Single Amplified Gen...
Shell · 6 stars
-
busco_hmms_for_anvio
Making BUSCO HMMs useable in Anvi'o.
Shell · 5 stars
-
refgen
A time-saving tool to change the 'defline' of FASTA files for a range of phylogenetic programs e.g. ClustalX, MrBayes, PhyML
Perl · 4 stars
-
orthagogue
Automatically exported from code.google.com/p/orthagogue
C++ · 4 stars
-
evomics_2017
Creating the AMI for the evomics.org Workshops
Perl · 2 stars
-
Perl · 1 star
-
evomics_2019
Creating the Virtual Machine (AMI) for the evomics.org Workshops
Perl · 1 star
-
orchard
:seedling: :clipboard: :arrow_right: :8ball: :arrow_right: :palm_tree: :evergreen_tree: :deciduous_tree: - A quick phylogenetic tree buil...
Perl · 1 star
-
Shell · 0 stars
-
evomics_2018
Creating the VM setup for the evomics.org Workshop on Genomics
Perl · 0 stars
-
orchardDB
:apple: :deciduous_tree: A script to create and populate a local database of amino acid sequences combined with taxonomic information, th...
Perl · 0 stars
-
guyleonard/refgen#1 · 0 comments · 0 reactions · 0 assignees ·
-
auto-migrated OpSys-OSX Priority-Medium Type-Defect
guyleonard/orthagogue#3 · 0 comments · 0 reactions · 0 assignees ·
-
std::bad_alloc Openauto-migrated Priority-High Type-Defect
guyleonard/orthagogue#4 · 9 comments · 0 reactions · 0 assignees ·
-
segmentation fault Openauto-migrated Priority-Medium Type-Defect
guyleonard/orthagogue#5 · 5 comments · 0 reactions · 0 assignees ·
-
auto-migrated Priority-Critical Type-Defect
guyleonard/orthagogue#6 · 2 comments · 0 reactions · 0 assignees ·
-
auto-migrated Priority-Medium Type-Defect
guyleonard/orthagogue#7 · 2 comments · 0 reactions · 0 assignees ·
-
auto-migrated Priority-Medium Type-Defect
guyleonard/orthagogue#9 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/treenamer#1 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#5 · 0 comments · 0 reactions · 0 assignees ·
-
pfamscan Open
guyleonard/evomics_2017#8 · 0 comments · 0 reactions · 0 assignees ·
-
no gedit Open
guyleonard/evomics_2017#9 · 0 comments · 0 reactions · 0 assignees ·
-
fastq-dump Open
guyleonard/evomics_2017#10 · 0 comments · 0 reactions · 0 assignees ·
-
multiqc Open
guyleonard/evomics_2017#11 · 0 comments · 0 reactions · 0 assignees ·
-
krona Open
guyleonard/evomics_2017#12 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#13 · 0 comments · 0 reactions · 0 assignees ·
-
timezone Open
guyleonard/evomics_2017#14 · 0 comments · 0 reactions · 0 assignees ·
-
radseq Open
guyleonard/evomics_2017#15 · 0 comments · 0 reactions · 0 assignees ·
-
phylogenomics 1 Open
guyleonard/evomics_2017#16 · 8 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#17 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#18 · 0 comments · 0 reactions · 0 assignees ·
-
IGV download path Open
guyleonard/evomics_2017#19 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#20 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#21 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2017#22 · 0 comments · 0 reactions · 0 assignees ·
-
Salmon Open
guyleonard/transcriptomics_2017#1 · 0 comments · 0 reactions · 0 assignees ·
-
Things to check Open
guyleonard/evomics_2018#1 · 2 comments · 0 reactions · 0 assignees ·
-
help wanted
guyleonard/busco_hmms_for_anvio#1 · 0 comments · 0 reactions · 0 assignees ·
-
good first issue
guyleonard/busco_hmms_for_anvio#2 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/busco_hmms_for_anvio#3 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orthomcl_tools#1 · 0 comments · 0 reactions · 0 assignees ·
-
ran into erro Openbug
guyleonard/orthomcl_tools#2 · 2 comments · 0 reactions · 1 assignee ·
-
guyleonard/orthomcl_tools#4 · 0 comments · 0 reactions · 0 assignees ·
-
bug
guyleonard/orthomcl_tools#5 · 1 comment · 0 reactions · 1 assignee ·
-
guyleonard/orthomcl_tools#6 · 0 comments · 0 reactions · 0 assignees ·
-
enhancement
guyleonard/sagawe#8 · 0 comments · 0 reactions · 1 assignee ·
-
guyleonard/evomics_2019#1 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/evomics_2019#2 · 0 comments · 0 reactions · 0 assignees ·
-
Java install issue Open
guyleonard/evomics_2019#4 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orchard#1 · 0 comments · 0 reactions · 1 assignee ·
-
guyleonard/orchard#3 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orchard#4 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orchard#7 · 1 comment · 0 reactions · 0 assignees ·
-
guyleonard/orchard#8 · 0 comments · 0 reactions · 0 assignees ·
-
gzip report folder Open
guyleonard/orchard#11 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orchard#14 · 0 comments · 0 reactions · 0 assignees ·
-
read in ortho groups Open
guyleonard/orchard#15 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/orchardDB#1 · 0 comments · 0 reactions · 0 assignees ·
-
guyleonard/get_jgi_genomes#17 · 4 comments · 0 reactions · 0 assignees ·