phylogenomics 1

ete3 won't compile Slr
python 3.4 is needed for ete, 3.5 is installed
jmodeltest not installed
trimal not installed
r8s
- sudo mkdir /usr/include/sys
- sudo cp --archive /usr/include/errno.h /usr/include/sys/errno.h
- c'continuousML.h is missing from package

Start by reproducing the ete3/Slr compilation problem with the installed Python 3.5, then check whether jmodeltest, trimal, and r8s are available. Inspect the missing continuousML.h package issue and the listed /usr/include/sys/errno.h workaround. Done means the phylogenomics AMI setup completes without the reported compilation and dependency failures.

Written by the indexing model from the issue text.