guyleonard / guyleonard/evomics_2017

TrimGalore download path

Open Beginner friendly
#18 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Perl
Stars
2
Forks
4
PR merge metrics
No merged PRs in 30d

Description

Now hosted on github and file structure changed so this file - /genomics/software_tasks/trim_galore.yaml - needs to be updated to:

```
- name: Download Trim Galore! {{version}}
get_url: url="https://github.com/FelixKrueger/TrimGalore/archive/{{version}}.zip" dest={{source_dir}}/trim_galore_v{{version}}.zip

- name: Unzip Trim Galore!
unarchive:
src: "{{source_dir}}/trim_galore_v{{version}}.zip"
dest: "{{software_dir}}"
copy: no
creates: "{{software_dir}}/trim_galore_zip"

- name: Install Trim Galore!
file: src="{{software_dir}}/TrimGalore-{{version}}/trim_galore" dest=/usr/local/bin/trim_galore state=link
```

Contributor guide

No contributing guide indexed for this repository

Research direction

Update /genomics/software_tasks/trim_galore.yaml using the task block in the issue, starting by inspecting its current download, unzip, and install steps. Done means the file uses the GitHub archive URL and the revised extraction and symlink paths shown in the issue.

Written by the indexing model from the issue text.

Assessment

Tech stack
yaml
Domain
devops
Issue type
Bug
Difficulty
1/5
Estimated time
Under an hour
Activity status
Stale
Clarity
Clearly specified
Newbie friendliness
72/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.