guyleonard / guyleonard/evomics_2017
TrimGalore download path
- Dominant language
- Perl
- Stars
- 2
- Forks
- 4
- PR merge metrics
- No merged PRs in 30d
Description
Now hosted on github and file structure changed so this file - /genomics/software_tasks/trim_galore.yaml - needs to be updated to:
```
- name: Download Trim Galore! {{version}}
get_url: url="https://github.com/FelixKrueger/TrimGalore/archive/{{version}}.zip" dest={{source_dir}}/trim_galore_v{{version}}.zip
- name: Unzip Trim Galore!
unarchive:
src: "{{source_dir}}/trim_galore_v{{version}}.zip"
dest: "{{software_dir}}"
copy: no
creates: "{{software_dir}}/trim_galore_zip"
- name: Install Trim Galore!
file: src="{{software_dir}}/TrimGalore-{{version}}/trim_galore" dest=/usr/local/bin/trim_galore state=link
```
Contributor guide
No contributing guide indexed for this repository
Research direction
Update /genomics/software_tasks/trim_galore.yaml using the task block in the issue, starting by inspecting its current download, unzip, and install steps. Done means the file uses the GitHub archive URL and the revised extraction and symlink paths shown in the issue.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- yaml
- Domain
- devops
- Issue type
- Bug
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 72/100