guyleonard / guyleonard/treenamer
Issue related to the name's .svg file.
- Dominant language
- Perl
- Stars
- 1
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Description
I would like to report an issue!! :)
Software error:
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Sorry the format 'svggraph' can only be used as an output format
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:486
STACK: Bio::TreeIO::svggraph::next_tree /usr/share/perl5/Bio/TreeIO/svggraph.pm:224
STACK: main::bioperl_it_up /usr/lib/cgi-bin/treefix.cgi:244
## STACK: /usr/lib/cgi-bin/treefix.cgi:193
Please send any errors with a description to g.leonard@nhm.ac.uk
# An inappropriate error message; the mistake in this case is related to the name of the .svg file which can not contain any dot "." in. Just replace every dot if present!
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Research direction
Start with the stack locations named in the report, especially /usr/lib/cgi-bin/treefix.cgi and Bio::TreeIO::svggraph.pm, and trace how the SVG output filename reaches the formatter. Reproduce the case with a dot in the name; done means dots are replaced and the reported input no longer produces the inappropriate format error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- perl
- Domain
- backend
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100