con/nwb2bids

View on GitHub

Reorganize NWB files into a BIDS directory layout.

Stars: 5
Forks: 6
Open beginner issues: 0
Indexed issues: 37
Avg merge: 4h 6m
Merged PRs (30d): 1

Dominant language: Python
License: MIT
Last GitHub push: Sep 6, 2026
Latest indexed: Sep 15, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Open All

37 open issues indexed

support ndx-events Open

enhancement

con/nwb2bids#29 · 1 comment · 1 reaction · 2 assignees · Indexed Sep 15, 2026
Add documentation on how to produce DataLad BIDS dataset: 2 possible setups Open

documentation

con/nwb2bids#54 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add stim Open

enhancement future

con/nwb2bids#64 · 1 comment · 1 reaction · 1 assignee · Indexed Sep 15, 2026
Should we split NWB contents to follow proper BIDS derivatives? Open

question

con/nwb2bids#65 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Bubble-up all common metadata from .tsv and .json sidecards up the hierarchy Open

enhancement

con/nwb2bids#67 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Think about better message passing framework Open

enhancement future

con/nwb2bids#103 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Generate nice 'report' of inspections Open

enhancement

con/nwb2bids#104 · 1 comment · 1 reaction · 2 assignees · Indexed Sep 15, 2026
Add configuration file Open

enhancement

con/nwb2bids#115 · 2 comments · 1 reaction · 2 assignees · Indexed Sep 15, 2026
Relabel internal category to 'INTERNAL' Open

enhancement

con/nwb2bids#123 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Consider DANDI metadata specific notification category Open

enhancement

con/nwb2bids#124 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add micr support for ophys Open

enhancement future

con/nwb2bids#178 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add beh support when no other modality detected Open

enhancement future

con/nwb2bids#179 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add more sanitization levels Open

enhancement

con/nwb2bids#180 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add ability to autoproduce documentation/tutorial output listings etc Open

documentation future

con/nwb2bids#188 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Support merging with existing dataset_description.json when converting to existing BIDS directory Open

enhancement future

con/nwb2bids#189 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
worth making it relative and make that relative to the top of the bids directory. BIDS (validator) ignores all `.dotdirs` so there should be no side effect. Open

tests

con/nwb2bids#198 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Use `acq-` to handle multiple NWB files Open

enhancement

con/nwb2bids#239 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Use `_tasks.tsv` to assign task labels Open

future

con/nwb2bids#240 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Investigate: run time on 000008 Open

future performance

con/nwb2bids#252 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Running pytest's under uv directly fails with a big bang Open

bug tests

con/nwb2bids#266 · 26 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add CI check for PR title being in past tense Open

future internal

con/nwb2bids#280 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Consider Zarr support Open

enhancement future

con/nwb2bids#293 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
MissingSessionID is not reachable Open

future

con/nwb2bids#297 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Automatically calculate BIDSVersion Open

enhancement

con/nwb2bids#303 · 8 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Parallize pytest runners Open

future internal tests

con/nwb2bids#307 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Incremental update capability Open

future

con/nwb2bids#319 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Idea: Auto-detection of `RecordingType` Open

future

con/nwb2bids#337 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Idea: include UBERON link to `BodyPartsDetailsOntology` Open

future

con/nwb2bids#338 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
De-duplicate electrode IDS Open

con/nwb2bids#367 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Do not write 'original_session_id' to table if no change Open

con/nwb2bids#370 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Auto-create README.md Open

con/nwb2bids#372 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Blank gain written to icephys channels.tsv Open

con/nwb2bids#375 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Dandiset name sometimes doesn't fill Open

con/nwb2bids#379 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Produce CITATION.cff (in particular in case of DANDI dandisets/datacite record available) Open

con/nwb2bids#385 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Rethink session metadata default populations Open

con/nwb2bids#388 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add 'age' column 'Units' into participants.tsv Open

con/nwb2bids#398 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add support for BEP028 provenance record(s) Open

con/nwb2bids#401 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

con/nwb2bids

Get new issues in your inbox